Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139408938
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Entry
139408938 CDS
T10872
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139408938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139408938
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
139408938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
Motif
Other DBs
NCBI-GeneID:
139408938
NCBI-ProteinID:
XP_071009537
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Position
5:complement(47674929..47699251)
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AA seq
522 aa
AA seq
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MAFNFGGAATNPATGLAVPGFGTTTTAAAPAGFGGFGTTTTGAFGGFGTTTTSAAAPGST
FSFAAPASTTGGLFGNTQNKGFGFSSGLGTGTTAAAGFGTGLGTTLGGGFGGFNIQPQQQ
QQGSFFGQQAQAPAQSNQLVHTANALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFNNQ
LPPVDFTQENPFCRFKAVGYSCIPGSKDEDGLVVLAFNKKEADVRSQQQQLVESLHKVLG
GNQTLTVNVEGVKALPDDQTEVVIYVVERSPNGTSKRIPATTLYSYVEQANTKAQLTQLA
VFMSVTRTELSPAQLKQLLANAPAGVDPIIWEQAKVDNPDADKLIPVPMVGFKELLRRLK
IQDQMTKQHQSRVDIISNDISELQKNQATTVAKIAQYKRKLMDLSHRVLQVLIKQEIQRK
SGYAIQVDEEHLRVQLDTIQCELNAPTQFKGRLNELMSQIRMQNHFGAVRSEERYSVDGD
LLREIRQHLKQQQEGLSQLISVIKDDVEDIKLIEHGLLDRLG
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcaactttggcggcgctgccaccaacccagcaacaggtcttgcagtccctggt
ttcgggaccaccaccactgctgcggcccccgctggcttcggcggcttcggcaccaccacc
acaggtgcttttgggggttttgggacaaccactacatccgctgctgcgcctgggtcaact
ttcagcttcgccgctcctgcaagcacaacaggaggactgtttggtaatacccagaataag
ggatttgggttctcctctgggctgggcactggcactactgctgcagctgggtttggaaca
ggtctggggacaactctaggaggtggatttggtggcttcaatatccagccacagcagcaa
cagcaaggaagcttttttgggcagcaggcccaggccccggcccagtctaatcagctcgtc
cacacagctaacgccctgtctgcccccaccctgcttggggacgagagagatgccatcttg
gccaagtggaatcagctccaggccttctggggaacaggcaagggctatttcaacaaccaa
ctcccccctgtagacttcacacaggagaaccctttctgcaggttcaaggcggtgggctac
agctgtatcccaggcagtaaggatgaggatggtctggttgtcctggccttcaataagaag
gaggctgatgttcgtagccaacagcagcagctggttgagtctctacacaaggtgctggga
gggaaccagactctcaccgtcaacgtagagggagtcaaagccctgcctgatgaccagacg
gaggtggtgatctatgtggtggagcgttctcctaacggcacatctaagaggatcccagct
acaacattgtacagctatgtagagcaggctaacaccaaggcccagctcacacagctagca
gttttcatgtctgttacacgcactgagctctcaccagcacagctcaaacagctgctggcg
aatgcaccagcaggagtggatcccatcatttgggaacaggcaaaggtggataaccctgat
gcggacaagttgatccccgtccccatggttggtttcaaagaactactccgcagactgaag
attcaggaccagatgaccaaacagcaccagtccagagtagacatcatctctaatgacatc
agtgaactgcagaagaaccaggcaacaacagtggctaagatcgctcaatacaagaggaag
ctgatggatctctctcacagagtactacaggtgctgatcaagcaggagattcagaggaag
agtggctatgccatccaggtagatgaggagcacctaagagtgcagctggacaccatccag
tgtgaactcaatgcccccacgcagtttaaggggcgtctgaacgagctgatgtctcagatc
cggatgcagaaccactttggggcggtgcgctcagaggaacgatatagtgtggacggagac
cttctccgagagatcagacagcacctgaagcagcagcaggagggtctgagtcagcttatc
agtgtgatcaaagatgacgtggaagacatcaaactgatagaacatggcctcctggacaga
ctcggctga
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