Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139408955
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Entry
139408955 CDS
T10872
Name
(RefSeq) neurogenic locus notch homolog protein 1-like isoform X1
KO
K02599
Notch 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
139408955
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF
hEGF
EGF_TEN
EGF_CA
Ank_2
Ank
Notch
NOD
NODP
Ank_3
Ank_4
EGF_2
Ank_5
EGF_3
EGF_DL_JAG
Motif
Other DBs
NCBI-GeneID:
139408955
NCBI-ProteinID:
XP_071009585
LinkDB
All DBs
Position
5:complement(48438831..48513921)
Genome browser
AA seq
2481 aa
AA seq
DB search
MYRFFVKLTFLIPVIVITQGLRCSLTTESCLNGGRCEASSDRNGECRCTSDYVGSRCQYS
NPCNPSPCRNGGECRAVSHGNTFEFHCKCRLGFSDQLCLTPTNHACMSSPCRNGGTCDLI
TLSDYRCRCPPGWSGKTCQIANPCASNPCANGGQCSPFESHYICACLPAFHGQTCKLDVN
ECAQMSSPCRNGGMCVNEVGSYHCRCPQEYTGANCETPYMPCNPSPCHSGGTCVQKGDTT
YDCSCLPGFTSQNCDHNVDDCPGHNCQNGGLCVDGVNTYNCQCPPHFTGQFCTENVDECE
MMPNTCQNGGTCHDTYGSFHCVCVNGWTGDDCSENIDDCASAACYHGATCHDRVASFFCE
CPHGRTGLLCHLDDACISNPCQKGSNCDTNPVNGKAICTCPPGYTGSACNQDIDECSLGA
NPCEHGGRCLNTKGSFQCKCLQGYEGPRCEMDVNECMSNPCQNDATCLDQIGGFHCICMP
GYEGVFCQINTDECASMPCLNNGKCIDRINSFHCECHKGFSGGLCQVDIDECASTPCMNG
AKCTDGPNKYSCECTEGYSGQHCETDINECYSDPCHYGTCKDGLATFTCYCHPGYTGRLC
ETNINECLSQPCQNGGTCQDRENTYICTCPKGTAGFNCEVNLDDCKSKPCDYGRCIDKIN
SYECACEPGYAGAMCNINTDECAINPCHNGGTCIDGINSFTCLCPEGYSDATCLLQVDEC
GSNPCIHGRCQDLLNGYRCFCDSGWGGPNCDINNNECESNPCMNGGTCKDMTSGYVCSCR
AGFSGPNCQTNINECASNPCLNQGTCIDDVAGYKCNCLLPYTGEMCETLLAPCSPMQPCK
NGGVCHESEDYQSFSCLCPEGWQGQTCEIDINECVKSPCRSGATCHNMVGSYRCSCRPGY
TGQKCETDIDDCKPNPCSNGGLCRDGVDSFVCTCLPGFRGGRCEHDINECESNPCKNGAN
CTDCVNSYTCTCQPGFSGINCENNTPDCTESSCFNGGTCVDGINTFTCLCLPGFTGSYCQ
HDINECDSKPCLNGGTCLDSYGTYKCTCSHGYTGVNCQNLVRWCDSSPCKNGGSCWQQGS
SYTCQCQTGWTGLYCDVPSVSCEVAAKQQGVEVAHLCRNSGQCLDAGNTHYCRCQAGYMG
SYCQEQVDECSPNPCQNGATCTDYLGGYSCECLPGYHGVNCSKEINECLSQPCQHGGTCI
DLINTYKCSCPRGTQGIHCEINLDDCNPSTDPLTNEPKCFNKGQCVDRVGGYHCMCPAGY
VGERCEGDVNECLSDPCDLRGSYNCVQLTNSYRCECRTGYTGQRCDKVFDGCKGRPCRNG
GMCAVASNNPDGFICKCPPGYTGSSCEYDSRFCGSLNCRNGGTCVSGHLSPRCLCPTAFT
GPECQTPTNSPCNVNHCYNGGTCQRTPDAPFFHCSCPNNFNGLLCHILDYSFPGGFGRDI
TPPPEVEVSCEIPQCDEWAGNHICDSLCNNHACGWDGGDCSLNFDDPWQNCSAALQCWRY
FNDGKCDEQCKSPGCLYDGFDCQGQEGQCNPLYDQYCKDHYADGHCDQGCNNAECEWDGL
DCANNMPEKLADGHLVLVVHIPPEQLKNGLSTFLRELSSVLHTNVVFRRDANGEPMVFPY
YGSEQELAKHNVKRSTDSWPDWAVVPANMLGQVKESVGSMVNLPRQRRELDLMQVKGSVV
YLEIDNRQCYQQSTECFQSATDVAAFLGALASSGNLNVPYIEAVTSVQPTPASSELYPMY
VVFLGLAVLGFICLGVLVSRKRRREHGQLWFPEGFKVSEPSKKKRREPVGEDSVGLKPLK
NILDISLMDDSQNGLWGEEEPDSRRFRFEEQAVLDLDDRTDHRQWTQQHLDAADLRIPSI
ALTPPQGEIENDCMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDPSAEIISDFIYQG
ANLHNQTDRTGETALHLAARYARSDAAKRLLESTADANVQDNMGRTPLHAAVAADAQGVF
QILIRNRATDLDARMHDGTTPLILAARLAVEGMVDELINCHADANAIDDFGKSALHWASA
VNNVDAAMVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLEHFANREITDHLDQLP
RDIAQERMHHDIIRLLDEYNLVRSPGLHNGTLSATNLSPPLCSPNGYLGSLKPTAPGKKV
RKPGSGGKDGGKDMRIRKKKSLDSSAVLSPVDSLESPHGYLSDVASPPMTSPFQQSPPMS
FNHLQGSGDSHVGQMGMGKGQDMGRMPFDPNPPRLSHLPVSSPGSQGTITMAIGGAGGRG
QCDWHSRIHPGLGQQGGFNQGLPMSHGMMAPLRGVPTATLSRIMGYQGLQTSHLGTPPHL
MQQMHSRQNPQLQHQNSNSTTAGQVLSQSFLSSELSGSDLQQGNGVCRSVPIHTILPQET
QILGTQFLTPPSQHSYSGPIDNTPNHQLQVPDHPFLTPSPGSPDQWSSSSPHSNMSDWSE
GISSPPMSLHSQMGLIPNQFK
NT seq
7446 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgtttctttgtgaaactaacgtttcttattccagtcatcgtcataacacaaggt
ctaagatgctctctaactactgaatcatgtctgaatggagggaggtgtgaggcctcctct
gacagaaatggagaatgcaggtgtacaagtgactatgtgggtagccgctgccagtactcc
aacccctgcaacccctcgccatgccgcaacggcggcgagtgccgcgccgtatcccatggc
aacacttttgaattccactgcaaatgtcgactgggcttctccgaccagctgtgcctgacg
cctaccaaccatgcctgcatgagttcgccatgtcgcaatggagggacttgtgacctgatc
acgctctccgactaccgctgccgctgcccgcccggatggtcagggaagacatgccagatt
gccaacccctgtgcatccaacccctgtgccaacggtggacaatgctcacccttcgagtcc
cactacatctgcgcatgcctgcccgcctttcatggccagacctgcaagctggacgtcaat
gagtgtgcccagatgtcgtcaccctgtcgcaacgggggcatgtgtgtgaatgaggtgggc
tcctaccactgccgctgcccccaggagtacacgggtgccaactgcgagaccccctacatg
ccatgcaacccctctccctgccacagtgggggcacttgcgtgcagaagggggacaccacc
tatgactgcagctgcctgccaggatttacaagtcagaattgtgatcacaacgttgatgac
tgcccaggccacaactgtcagaatggtggcttgtgtgtggatggggtcaacacctacaac
tgccagtgcccccctcactttacaggccagttctgtaccgagaatgtggatgagtgtgag
atgatgccaaacacgtgccagaacggcggtacatgccacgacacctatggcagcttccac
tgtgtctgtgtcaatggctggacgggcgacgactgcagtgagaacatcgacgactgtgcc
agcgcagcctgttatcacggcgccacatgccacgaccgcgtagcctccttcttctgcgag
tgtccacatgggcgcacaggtttactgtgtcatcttgatgatgcctgcatcagtaacccg
tgtcagaaaggctctaactgtgacaccaatcctgtcaacgggaaagccatctgtacctgc
cctccaggttacactggctctgcatgcaaccaggacattgacgagtgttctttaggtgcc
aacccttgcgagcacggtgggcgctgcctgaacactaaaggctcgttccagtgcaagtgt
ctccagggttatgagggcccgcggtgcgagatggatgtcaacgagtgcatgtccaacccc
tgtcagaacgatgccacatgcctggaccaaattggaggattccactgcatctgcatgcca
ggttatgagggggtgttttgccagatcaacactgacgagtgtgccagcatgccctgtctg
aacaacgggaagtgcatcgacaggatcaactccttccactgcgagtgccacaaaggcttc
tctggtggtctatgtcaggttgacatcgatgagtgtgccagcacgccctgcatgaacgga
gccaagtgtaccgacggccctaacaaatactcatgtgaatgcactgaaggttactctgga
cagcactgtgagactgacatcaacgagtgttactcggacccctgtcactatggcacgtgt
aaggacggcctggccaccttcacctgctactgtcaccctggttacacgggccgcctgtgt
gagaccaacatcaatgagtgtctgagccagccatgtcagaacggaggcacctgtcaggac
agggagaacacttacatctgcacctgccccaagggcactgcaggctttaactgtgaggtg
aatctggatgactgtaagagcaagccctgtgactacgggaggtgcattgacaagatcaac
agctatgagtgtgcatgtgagccaggttacgcaggcgccatgtgcaacatcaataccgat
gagtgtgccatcaacccctgtcacaatggtggcacctgcatcgatggcatcaacagcttc
acatgcctgtgcccagagggctacagtgatgccacctgtctgttgcaggtggacgagtgt
ggcagcaacccctgcatccatggtcgctgccaggatctgctcaatggctacaggtgtttc
tgtgactctggctggggtgggcctaactgtgacatcaacaacaacgagtgtgagtccaac
ccgtgtatgaacggtggcacctgcaaggatatgaccagtggatatgtttgtagctgccga
gccggcttcagtggacctaactgccaaactaacatcaatgagtgtgcctccaacccctgc
ctgaaccagggcacctgcattgacgatgtggccggctacaagtgcaactgcttactgccc
tataccggtgagatgtgtgagacactgctggccccatgcagccccatgcagccctgtaag
aacggtggagtgtgtcatgagtcagaggactaccagagcttctcctgcctctgtccagag
ggatggcaaggtcaaacatgcgagatagatatcaacgaatgtgtgaaaagtccttgccgc
agcggcgccacatgccacaacatggtgggcagctaccgatgcagctgccgtccgggctac
accggccagaagtgtgagacggacatcgacgactgcaagcccaacccctgcagtaatgga
ggtctgtgcagagatggagtggacagctttgtgtgcacttgtctgccagggttccgtggt
ggcaggtgtgagcatgacattaatgagtgcgagagcaacccgtgtaagaatggggccaac
tgcaccgactgtgtcaactcctacacctgcacctgtcaacccggtttcagtggcatcaac
tgcgagaataacacccccgactgcacagagagctcttgcttcaacggtggcacctgcgtg
gatggcatcaataccttcacctgcctgtgtctgccaggcttcacaggcagctactgccag
cacgacatcaatgagtgtgactccaagccctgcctcaatggtggcacctgtctggacagc
tacggcacctacaagtgtacctgctctcatggctacactggagtcaactgccagaacctg
gtgcggtggtgtgactcatctccctgtaagaatggaggctcatgttggcagcagggctcc
tcgtacacctgtcagtgtcagacgggatggaccggcctctactgtgacgtccccagtgtc
tcctgcgaggtggctgccaaacagcaaggtgtggaggtggctcacctgtgtcgtaactcg
ggccagtgtctggatgctggcaacacccactactgccgctgccaggcgggctacatgggc
agctactgccaggaacaggtggacgagtgctcccccaacccttgccagaacggtgccacc
tgcacagactacctgggagggtacagttgtgagtgtcttcctgggtaccacggggtgaac
tgctccaaggagatcaacgaatgtctgtctcagccctgtcagcatgggggcacctgcatc
gacctcataaacacctacaaatgctcctgtcccagaggaacacaaggcattcactgtgag
atcaacctggatgactgcaacccctctacagaccctctgaccaatgagcccaagtgtttc
aacaagggtcagtgtgtggacagagtggggggctaccactgcatgtgtcccgctggctac
gtaggggagcgctgcgagggtgacgtcaacgagtgcctgtcggacccctgcgacctgcga
ggctcctacaactgtgtccagctcaccaacagctaccgctgcgagtgtcgcactggatac
acaggccagcgctgtgacaaggtgtttgatggctgtaaggggagaccatgtaggaacgga
ggaatgtgtgcagtggccagtaacaaccccgacggattcatctgcaaatgcccaccgggt
tacacaggctcctcctgcgaatacgactcacgcttctgtggtagcctcaactgcagaaat
ggtggcacctgtgtctctggccacctgagccctcgttgcttgtgccccacagcttttacc
ggccctgagtgccagactcccacaaacagcccctgcaatgtcaaccactgctacaacggg
ggcacttgccagagaacccccgatgcacccttcttccactgcagctgcccgaacaacttc
aatggcctgctctgccacatccttgattactcctttcccggtgggttcggccgggacatc
acaccaccacccgaggtagaggtgagctgcgagatcccgcagtgcgacgagtgggcgggc
aaccacatctgtgactcgctgtgcaacaaccacgcctgcggctgggacggtggcgactgc
tcgctcaacttcgatgacccatggcagaactgctcggcagctctgcagtgctggcggtac
ttcaatgacgggaagtgcgacgagcagtgcaaaagccctgggtgtctctacgacggcttc
gactgccagggacaggagggacagtgcaacccgctgtatgaccagtactgtaaggaccac
tacgcggacggccactgcgaccagggctgtaacaacgcagagtgcgagtgggacggcctg
gactgcgccaacaacatgcccgagaagctagctgatggccacctggtccttgtggtccac
atcccccccgagcagctaaaaaatggtttgtccacgttcctccgtgagctcagcagcgtt
ttgcacaccaacgtggtgttccggcgtgacgcaaacggagagcccatggtgttcccctac
tatggcagcgagcaggagctggccaagcacaacgtgaagcgttccaccgacagctggcct
gactgggcggtcgtgccggccaacatgctcggtcaggtgaaggagagcgtggggtccatg
gtgaacctgccccgccagcgccgagaattggacctcatgcaggtcaaagggtcggtggta
tacctggagattgataaccgccagtgctaccagcagtccacggaatgcttccagagcgcc
accgacgtcgccgcgttcctgggagcgctggcctccagcgggaacctcaatgttccttac
atcgaggcagtcaccagtgtgcagcccacccctgcatcctctgagctatacccaatgtac
gtggtgttcctggggctggctgtactgggcttcatctgcctgggggtgctggtgtcacgt
aaacgccgacgggagcacggacagctctggttccctgagggcttcaaagtttctgagccc
agcaagaagaaacgcagagagcccgtaggagaggactctgtgggactcaagccactgaag
aacattttggacatttctctgatggacgacagccagaatggattgtggggagaggaggag
ccagactcgagacgctttaggtttgaggagcaggccgtgttggacctagatgaccgcact
gaccacagacagtggacccagcaacacctggacgcggctgacctgcggatcccttccatc
gccctcacgcctccccagggagagatcgagaatgactgcatggacgtcaatgtccgaggc
ccagatggtttcactcctctaatgatcgcatcgtgcagcggaggaggcttggagacgggg
aacagtgaggaggaggaggacccttcggctgagatcatctctgacttcatctaccagggt
gccaacctgcacaaccagacggaccgcacaggcgagaccgctcttcacctggctgcccgc
tacgcccgttccgacgccgccaagcgactgctggagtccaccgccgacgccaatgtccag
gacaacatggggcgcactccactgcatgccgctgtcgctgcagacgcacagggagtcttc
cagattctgatccggaaccgggcaactgatcttgacgcccgcatgcatgatggaacaact
cctctgatcctggctgcccgattggctgtggaaggcatggtggatgagcttatcaactgc
catgctgatgccaacgccatcgatgactttggtaaatctgcccttcattgggcttcagct
gtcaacaacgtggatgctgccatggtgttgttgaagaatggcgccaacaaagacatgcag
aacaataaggaggaaactcctctctttctggcagccagagagggcagttatgagacggcc
aaggtactgctggagcactttgccaaccgtgagatcaccgaccacctggaccagctgccc
cgggacatcgcccaggagcgaatgcaccatgacatcatccgtctgctcgatgaatacaac
ctggtgaggagcccagggctccataatgggaccctgagtgccactaacctgtctcctcct
ctgtgctcccccaacggatacctgggcagcctcaagcccaccgccccgggcaagaaggtc
cgcaagccaggctctggagggaaggatggtggcaaagatatgaggatacggaagaagaag
tccctggacagctcagccgttctctcgcccgtcgactccctggagtcgccccacgggtac
ctgtccgacgtggcgtcgccaccaatgacatcgccattccagcagtctccgcccatgtct
ttcaaccacctgcaaggcagtggagacagccacgtgggtcagatgggcatgggcaagggg
caggacatggggcgtatgccctttgacccgaaccctccccgcctgtcccacctgcctgtt
tccagccccggcagccagggaaccatcactatggccataggcggagctgggggaagagga
cagtgtgattggcactccaggatacacccgggtctcgggcagcagggtggctttaaccaa
ggccttcccatgtcccacggtatgatggctcccctccgcggggtccccactgccaccctg
tcccggatcatgggctaccagggcctgcagaccagccatctgggcacgccgccccacctc
atgcagcagatgcactcccggcagaacccgcagctccagcaccagaactccaactccacc
acggctggccaggtcctgagccagagtttcctgagcagcgagctgagcggctcggacctg
cagcagggcaacggggtgtgtcgctcggtccccatccacaccatcctcccccaggagacc
cagattctcggcacacagttcctcaccccaccctcccagcacagctattccggcccaata
gacaacacacccaatcaccagctgcaggtgcctgaccacccctttctaactccctccccc
ggatcccctgaccaatggtccagctcctctccacattccaatatgtctgattggtcagag
ggcatctccagtcctccaatgagtttgcattctcagatgggacttatccctaaccagttt
aagtag
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integrated database retrieval system
