Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139409019
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Entry
139409019 CDS
T10872
Name
(RefSeq) FRAS1-related extracellular matrix protein 1b
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04512
ECM-receptor interaction
ocla04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139409019
04518 Integrin signaling
139409019
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
ocla04091
]
139409019
Lectins [BR:
ocla04091
]
C-Type lectins
Lecticans
139409019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
DUF807
Motif
Other DBs
NCBI-GeneID:
139409019
NCBI-ProteinID:
XP_071009759
LinkDB
All DBs
Position
5:55013770..55074378
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AA seq
2167 aa
AA seq
DB search
MAVARVHSWMLLTLMAVLPHACAQQSLVQVNSGVQVGRGRSVFVTDKELQFNVDQTSDCK
VEVMLNEPVTQRVGKLTPQVFDCHFLPDEVKYIHNGSPLLEEDTVMLRVYRFTDSDTVVE
TVVLRMIVVEPESSLVELGSTPLVVPRFYGLSNAIDGGILSIRSPPDVACTVRLLTPETS
VPSLGQLVTEDDTGLRKGRQTGDPCPGNKPCLHGTKEVRFLKATCHEFLSLALKYQHLSP
PSPEIDYIPIRVELRDQASRALLETEAVWLPVLIHGAMQNQPPQAAFMASFILEADQFIL
TPLTTAALDAKDGETPQERLVFNVTKPPAQGYIAHLDDHTKTCHSFIWQDLHEMKIAYQP
PNSSHTGRRNYEVEFQAIDGSYVASPPIMVHFSIRAAETNAPRVSWNMGLDLLEGQSRPI
TWEDLQIVDSDNIDAVYLVAVDGPLHGRLSVRGGKGFMFRIRDLQEGVVVYHHSDSDTTR
DHIVFRITDGRHSIRHKFPINILPKDDTAPFLINNVALEVQEGGEVLVEEYMLLASDLDS
SDDYILYQLLTFPRAGEVVKKAHPQQPGVPVKSFLQRDLFMGMIYYRHSGEECFEDTFDF
TLSDSHQPPNLSHRHTVVIHVFPVKDQLPVEVSGSVRSVTVRETDVVYLTQSHIHFRDTE
HPDTDLSFFITTPCFSPTRPGLPDAGRLFYTDSTHSMKKDPMVPVLKSFTQHAVNHMKVG
YMPPIEDIGPEPLFVQFLFSVSDHHGGTTTDLLFNVTVTPVDNQAPEVFTNLLRVEEGGG
AFFTEEHLLVRDGDSLEDKLRVGVQTTPIHGKLELQGRELRQGDTFILQDLRGLRVRYIH
DDSETVEDTVGLTVTDGVNSAHVFLPVQILPVNDEPPQLGPGLLGGLTCEEGGLVQVTAE
YLFATDADSDDARLIYMLARTPARGELQRRGVTVDKFSQQDVLQGLIYYIHTGGEIGASP
VSDSVTLIVSDGEAGGMDSCCQGDALPPPVPLHGTLPVYDLNVTVLPVNNKAPVITMGDM
FVVDEGSSACLCGGVLGAEDPDTYPEELLFLLENPPLQGFLENTLPSPGFEKSNAGLRVV
SFSLLHLRAGYINYVQAEHQGTEPTVDQLVISVSDGRHKSPPIPFYIVIHPTNDETPSLA
LSNFTVMEGGIKELSPAILNALDLDAPVDILTFTVLVPPAHGTLLNGIYGTELSRYKNMG
PKLLLQSLMVHTFTMEELKQGMRIMYMHDDTETLKDLFTVQLTDGRHTIQGTAHLRVLPV
NDEKPRLLKNAGVEVDWMDRRVISSVVLEAEDLDTPTSKLYYILTAGPRFGKLQVKTEAG
WTDIGAGQNFTQEDVEFNRLWYAHTTGTGFKGHDSIRFTLSDLDNESPPQSFFISVRTIQ
KGDIVLVTRPVTLMEGERLILTTDILLATDGAARPGEMLYTVSVPPKHGHVHAVQRPGMP
FLSFSQLDVAAQRVCYTHDNSHTDEQDSFSFVVTNGISSRSGSLHFTIEHSDRIPPSLNR
NTGLQLTEGAVKSITPDHLELTDPDTAVGNLTYALTQPPQYGKLLLKGYPLTLPRFTQTD
INNMDLAYQHYQGSLAQIDRFSLMPSDGTNRGYLEYGQLKEEPLVFTIQVEHVDRNPPSL
VTKRIPSTVENLSGGPGDKQGIYITSRDLQASDPDSPAQELEFTITRPPHFGYLENSLTG
AYIKGRFTQRDLEQRAVLYVIPTDMEVTGDSFEFRVTDPAGNTMLPEILQLTWSRVELSA
TCYRVCENAGMLQVQLTRSGKSMDPAYIAIQVEDGTAKVGKDFTHSTASLIQFDPGVSVK
TWNIYLKDDGLEENHETFTVILNGPKNTVLGQRNSASVEIVDPRGGMCDPEDLRAEADEK
GVPSTAHVPQSPQLEEHVTDIETDLLWEGRPHPPRGDVPNRRPFLDYGDGEGEPQDQATP
FHSQATRQLRLQGNSNSNSRTVLHSGVRRKSEEKVWTFHALTPLRLEERRLPIPEPIPQV
HPDLQVIPIWSWSGHREFLHEVRVGDAPRDDAPVPSPKQHKAGRQRKAGRSVSTSCPTGW
SHYRRHCYILSLGVASWSSAQRACTLLFDSNLTGVQSKKDMAWLWKFAGKQAFWIGLSGS
PGHWTWTDGRSLSFSRLKRDRAQEQQPESAASRSTCVLAQSQKTWIPMTCTTAPERRYIC
SSPAQNH
NT seq
6504 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggccagggtccattcctggatgttgttgaccctgatggctgtcctaccacat
gcctgcgcccagcagagtctggtgcaggtgaactcaggggtccaggttggccgggggagg
tctgtgtttgtgacagacaaggagctgcagttcaacgtggaccagacatcagactgtaag
gtcgaggtcatgctcaatgagccggtgactcagagagtagggaaactcactcctcaggtg
tttgactgccatttcctgcccgatgaagtgaagtacatccataatggtagtcccctgctg
gaggaagacacagtcatgttgagagtgtacaggttcacagactccgacaccgtggtggag
acggtggtgttgaggatgattgtggtggaacctgagagcagcctggtagagctgggcagc
actcccctggtggtcccccggttctacggcctgtccaacgccatcgacggcggcatcctt
agcatccgcagtccgcccgacgtggcctgcaccgtgcggctgctcaccccagagaccagt
gtaccctccctggggcagctggtgaccgaggatgacactgggctgaggaaaggcagacaa
actggagacccctgtccaggaaacaagccctgcctccatggcaccaaggaggtgcgtttc
ctcaaagccacctgccacgagttcctcagcttggctctgaagtaccagcacctgagtccc
ccttctccggagattgactacatccctatcagagtggagctacgggaccaggcctccaga
gcactgttggagacggaggctgtgtggctgcccgtgctgatccatggggccatgcagaac
cagcctccgcaggccgccttcatggcctccttcatcctggaggcggaccagttcatcctc
acccccctgaccacggccgcgctggacgccaaggacggagagaccccccaggagcgcctg
gtgttcaacgtgacaaagccccccgcccagggctacatcgcccacctggacgaccacacc
aaaacctgccactccttcatctggcaggacctacacgagatgaagatagcctaccagccg
cccaatagtagtcacacagggaggaggaactatgaggttgagttccaggctattgacggt
tcctatgtagccagcccacccattatggtccacttctccatcagagcagctgagacaaac
gcacccagagtctcgtggaacatggggttggatctgttggagggtcagtctcggccaatc
acctgggaggatctccagatcgtggacagtgacaacattgatgctgtctacctggtggcc
gtggacggacctctgcatggacgactcagtgtcagaggtggtaaaggctttatgttccgg
atacgggacctacaagagggcgtggttgtctaccatcactcggacagcgacaccacccgc
gaccacattgtcttccgcatcacagacgggcgccacagcatccgccacaagttccccatc
aacatcctgcccaaggatgacacggcgccattccttatcaacaacgtggcattggaagtg
caggagggcggcgaggtgctggtggaagagtacatgctgctggcctccgacctggactcc
agtgatgactacatcctgtaccagctcctcaccttcccccgcgctggagaggtggtcaag
aaggcccacccacaacagccaggcgtgccagtgaagagtttcctgcagagggatctgttc
atggggatgatctattataggcactctggagaggagtgttttgaggacaccttcgacttc
accctctcagacagccatcaacccccaaacctatcccacagacacactgtggtgatccac
gttttcccagtcaaagaccagcttccggtggaggtgtctggcagcgttcgctcggttacg
gtgagggagactgacgtggtctacctgacccagagtcacatccactttagggacacagag
cacccagacacggacctctccttcttcatcaccacgccctgcttcagccccacacggcca
gggctacctgatgcagggcgactattctacacagacagcacccactccatgaagaaagac
ccaatggtccctgtgctaaagtcattcacccagcatgcagtcaaccacatgaaggtgggg
tacatgccccccatcgaggacatcggcccagagccgctgtttgtccagtttttgttctcc
gtgagcgaccaccacggtggaaccaccactgacctgctcttcaacgtcaccgtcactcct
gtggacaaccaggctcctgaggtgttcaccaacctactgagagtggaggaaggaggaggg
gccttcttcacggaggagcacctgttggtgcgggacggggacagcttggaggacaagctc
agagtaggggtgcagactacgcccatccacgggaagctggagctgcaggggcgagagctc
cgccagggtgacaccttcatcctccaagacctgagaggtctccgagtcaggtacatccat
gatgactctgagactgtggaggacactgttggtctaacagtaactgatggtgtcaactct
gctcatgtgttcttaccagtccagatcctaccggtgaatgacgagcccccccaactagga
ccagggctgcttggggggctgacctgtgaggaagggggcctggttcaggtcactgctgag
tacctgtttgccacggatgcagacagtgatgatgccaggctaatctacatgctggcccgg
acccctgccaggggggagttgcagagaaggggggttactgtggacaagttctcccaacag
gacgtcctgcagggactcatctactacatacacacagggggcgagattggagccagtccc
gtgtctgactcggtcactctcatcgtgtcggacggagaagcagggggcatggacagctgt
tgccaaggagatgccctgccaccacccgtacctctccacgggacacttcctgtttacgac
ctcaacgtgacggtgcttcctgtcaacaacaaggccccagtcatcaccatgggtgacatg
tttgtggtggacgagggctcctcagcctgtctatgtgggggagtgctgggggccgaggac
cccgatacgtaccctgaagagctcctcttcctcctggaaaacccacccctacagggcttc
ctggagaacaccctgccctcaccaggcttcgagaagagcaacgcaggcctccgagtggtg
tcattcagcctgctccacctcagagcgggttacatcaactacgtccaggcagagcaccag
gggactgagcccaccgtggaccagctggtgatcagtgtgagcgacgggaggcacaagtct
ccccccatccccttctacatcgtcattcaccccaccaacgacgagactccctctctggcg
cttagcaacttcactgtgatggagggagggataaaggagctgagtccggccattttgaac
gcgttggacttggacgccccggtggacattttgaccttcacagtattggttcccccagcc
cacgggaccctgctgaacgggatctatggaactgagttgagccgctataagaacatgggc
cccaagctacttctgcagagcctgatggtacacaccttcaccatggaggagctcaaacaa
ggaatgaggatcatgtacatgcacgatgacacggaaaccctgaaggacttgttcactgtg
caactgacagatggccgccacacaatccaggggaccgctcacctccgtgtcctaccagtc
aacgatgaaaagccccggctgctaaaaaatgcaggagtggaggtggactggatggacagg
agggtgatctccagtgtggtgttggaggcagaagacctggacactcccaccagtaagctc
tactacatcctcactgctgggcccaggtttggcaagctgcaggtcaagacagaagctggc
tggacagacattggagcgggtcaaaacttcacccaggaggatgtggagtttaaccgcttg
tggtatgcccacactactggcaccgggttcaaaggtcatgacagcatccgtttcaccctc
agtgacctagacaacgagtcccctcctcagagcttcttcatctcagtacgcaccatccag
aagggtgacatagtgctggtcaccaggccggtcaccctgatggagggagagcggctcatc
ctgaccacagacatcctactggctacggacggggctgccagaccgggggagatgctctac
accgtgtccgtcccgcccaaacacggacacgtccacgccgtccagcgtcctggaatgccg
ttcctcagcttctcccagctggacgtggcggcccagcgtgtgtgttacacccatgacaac
agtcacacggatgagcaggactccttcagcttcgtcgtcaccaacggcatcagctcccgc
agcggctccctgcacttcaccatagaacacagtgaccggatcccgccgtccctcaaccgc
aataccggcctccaactgacagagggagcggtgaagtccatcacaccagaccacctggag
ctcaccgacccagatactgctgtggggaacctgacctatgccctcacccagcccccgcag
tacggcaagctgctcctcaaggggtacccactgacattaccccgttttacccagactgat
atcaacaacatggacctggcttaccagcactaccagggcagcctggcccagattgacagg
tttagtctgatgccgtctgatggtactaacagaggatacctggagtatggacagctgaag
gaggagccgctggtcttcacaatacaggtggagcatgtggacaggaatccccccagcctg
gtgaccaagaggatccccagtacagtggagaacctctcagggggaccaggggacaagcaa
ggcatctacatcacgtcacgtgacctccaggcctctgaccccgacagtcccgcccaggaa
ctggagttcaccatcacacggccgcctcacttcggctacctagagaactccctcaccggg
gcgtacatcaaaggacgcttcacccagagggatttggagcagcgcgccgtgctctatgtc
atccccaccgacatggaggtgacaggggacagctttgagttccgtgtcactgaccctgcg
ggaaacaccatgctgcctgaaatactgcagctgacgtggtctcgggtggagctgtcggct
acgtgttaccgggtgtgtgagaacgcaggcatgctgcaggtgcagctgacgcgcagtggg
aaaagcatggacccggcctacattgctattcaggtggaagatggtactgccaaggtgggg
aaagatttcacccacagcacggccagtctgatccagttcgatccaggagtcagcgtgaaa
acctggaacatttacctgaaagacgacggcctggaagaaaaccatgagacgttcaccgtg
attctgaatggccccaagaacactgttctgggtcagaggaactcagccagtgtggagata
gtggatcctagaggaggaatgtgcgacccagaggacctgagggcagaggcagatgaaaaa
ggagtaccttcaaccgctcacgtcccccagtccccacagctagaggagcacgtcactgac
attgaaacagacctgctgtgggagggccgcccccatccaccaaggggggacgtgcccaac
cggaggcccttccttgactatggggatggagagggggagccccaggatcaagctactccg
tttcacagccaggccaccagacaactcagactgcagggcaacagtaatagcaacagtcgc
acggtccttcattcaggtgtcaggagaaagagtgaagagaaagtctggacgttccatgca
ctcaccccactgagactagaggagaggaggctgccgattccagagcccatcccccaggtg
cacccggacctccaggtgatccccatctggagctggtctggccacagggagttcctccat
gaggtgagggtgggggatgccccccgggatgatgcccctgtaccctcgcccaaacaacac
aaggctggtcgacagcgcaaggctgggaggtcagtgagcacttcctgccccacgggttgg
agccactacaggaggcactgctacatcctgagccttggcgtggccagctggagcagtgct
caacgggcctgcaccttactgtttgacagcaatctaacaggtgtccagtcgaaaaaagac
atggcttggttatggaaatttgctgggaaacaggccttttggatcggcctgtcaggcagc
ccgggacattggacctggacggacggcagatccctgtcattctccagactcaagagggac
cgagcccaagagcagcagcccgagagtgctgcctctagatccacatgtgtgttagcccaa
agccagaaaacatggatacccatgacctgcaccacggcaccagaacgcagatacatttgc
tcatcgccagcacagaatcactga
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