Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139409061
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Entry
139409061 CDS
T10872
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03013
Nucleocytoplasmic transport
ocla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139409061
03015 mRNA surveillance pathway
139409061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139409061
Enzymes [BR:
ocla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
139409061
5.6.2.5 RNA 5'-3' helicase
139409061
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
139409061
mRNA cycle factors
Common to processing body (P body) and stress granule
139409061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
ATPase
SLFN-g3_helicase
nSTAND3
NPHP3_N
Helicase_RecD
DEAD
AAA_16
AAA_22
UvrD_C_2
SRP54
Motif
Other DBs
NCBI-GeneID:
139409061
NCBI-ProteinID:
XP_071009831
LinkDB
All DBs
Position
5:complement(57279198..57297279)
Genome browser
AA seq
1107 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTQGHTQSQLDNQVNG
PNEGLHNGGVDDVAKASQILSELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNTS
KKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK
ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQ
QINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDVYQYQNIFGPLVKLEADYDKKL
KESQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDTPFVKDYGDEIAIELRSSVGAPVETTHDYQVDFVWKSTSFDRMQSALKTFAVDE
TSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPP
GTGKTVTSATIVYQLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDS
PVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLTNADVIC
CTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKK
AAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSSFPSNIFYEGSLQNGVTAADRIKKG
FDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIIT
PYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLN
DPRRLNVALTRAKYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFS
RPRKLVNAINPGARFMSTAMYDAREALIPGSAYDRSSAGRPSNMYFQTHDQIGMIGTGPA
HMAAMNMPIPFNLVVPPMPPPGYLAQANGPAAGRGGVLKGKAGRGGRQRPRGMGNHGSSG
QANGHNSQASQDVSSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQI
DVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaagcgtacgggccgagttctcaaacgctcaccttcctggacaccgaagaa
gcggagctacttggagcagatacccagggctcggagtacgagtttaccgattttacccta
cctagccagacacaaactcaaggccacacccagagtcagctggacaatcaggtgaatggt
cctaatgaagggcttcacaatggaggggttgatgatgttgccaaggcgagccaaattctc
tctgagttgaactttgaggaggatgaagaggacacctattacactaaagacctcccactg
catgcctgcagttactgtggcatccatgatcctgcgtgtgtggtgtactgcaacacaagc
aagaagtggttctgcaatggacgtggcaatacatctggcagccacatcgtaaaccacttg
gtgagagccaaatgcaaagaggtgactctgcacaaagacgggccgctgggcgagacggtg
ctggagtgctacaactgtggctgtcgcaacgtcttcctcctgggcttcatacccgccaag
gccgactctgtggtggtgctgctgtgcaggcagccatgtgccagtcagagcagcctgaaa
gacataaactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctgtcc
tggctggtaaagatcccctcggagcaggagcagctccgggcccgccagattaccgcccaa
cagatcaacaagctagaggagctctggaaggacaatccaacagccactctggaggatctg
gagaagcccggtgtagacgaggagcctcaacatgtgctgctgcgctacgaggatgtctac
cagtaccagaacatcttcggcccccttgtcaaactggaggccgactatgacaaaaagctt
aaagagtcccagacccaagataatataacggtcaggtgggacctggggctgaataaaaag
cggattgcctatttctccttgcccaagacggattcaggtgacatgcggttgatgcaggga
gatgagatttgtctgcgctacaaaggagacctggccccactttggaaaggcatcggtcat
gtcatcaaagtcccagacacaccctttgtgaaagactatggagatgagattgctatagaa
ttgcgcagcagtgtcggagcacctgtggaaacaacccacgactaccaggtggattttgtg
tggaagtccacttcctttgacagaatgcagagtgccctgaagacctttgctgtggacgag
acgtccgtgtcaggctacatctaccacaaactgctgggccacgaggtggaggatgtcatc
atcaagtgtcagctgcccaaacgcttcactgcccagggcctgcccgatctcaaccactct
caggtgtatgctgtgaagactgtgctgcaaagacccctcagtcttatccaaggccccccc
ggcactgggaaaactgtcacctctgccaccatagtgtaccagctcgccaggcagggcaac
ggacccgtgctggtgtgtgctcccagtaacatcgcggtggaccagctgactgagaagatc
cacatgtcaggtctgaaggtggtccggctgtgtgctaagagcagagaggccatcgactcc
cccgtctcattcctggcgctgcacaaccagatccgcaacatggacagtatgccagagctg
cagaagctgcagcagctgaaggatgagaccggggagctgtcgtctgctgacgagaagcgt
taccgggccctgaagcgcaccgctgagcgagagctgctcacgaatgcggatgtgatctgc
tgtacctgtgtgggggcaggagatccacgcctggccaagatgcagttccgctccatcttg
attgatgagagcacccaggccaccgagccagagtgcatggtgcctgtggtcctgggtgcc
aagcagctcattctggtgggagaccactgccagctgggcccagtagtgatgtgtaagaag
gcagccaaagcaggcctgtcccagtctctgtttgagcgtctggtggtgctgggcatcagg
cccattcgtctgcaggtgcagtaccgaatgcacccggccctcagctctttcccctccaac
atcttctacgagggctccctgcagaacggagtcaccgctgctgaccgcatcaagaaaggc
tttgacttccagtggccgcagccagacaagcccatgttcttctatgtaactcaaggccag
gaggaaatagccagctctggaacgtcctacctgaacagaactgaggcggccaacgtggag
aagatcacaaccaggctgctgaaggctggggccaagcctgaccagataggcatcatcacc
ccctacgagggccagaggtcctacctggtgcagtacatgcagttcagtggttccctccat
acaaaactctaccaggaggttgagatcgccagcgtggacgcgttccagggcagggagaag
gactttatcatcctttcgtgcgtacgagccaacgagcaccagggcatcggcttcctcaat
gacccgcgccgtctcaacgtggccctcacaagagccaagtatggggtgatcattgtgggc
aacccaaaggccctgtccaagcagcctctgtggaaccaccttctcaactactacaaggag
cagaaggttctggtggagggacccctcaacaacctgagagagagcctgatgcagttcagc
aggccccgcaagctggtcaatgccatcaaccctggagcccggttcatgagcactgccatg
tatgatgcccgtgaggccctcatccctgggtctgcctacgatcgcagcagcgcagggcgt
ccatccaacatgtatttccaaacccacgatcagatcggcatgattgggactgggccagcc
cacatggcggccatgaacatgcctattcccttcaacttggtggtgccccccatgcctccg
ccaggctacctggcccaggccaacggccctgctgcaggtcgtggtggggtgctgaagggc
aaagcagggcgtggcgggcgccagaggccccgcggcatggggaaccacggtagcagcggg
caggccaacgggcacaacagccaggctagccaggacgtatcttcccagcccttctcccag
gggccactcacccagggctacatcaccatgagtcagccctcccagatgagccagcctggc
ctctcccagcctgaactttcccaggacagttatttaggtgacgagttcaagtcccagatc
gacgtggctctgtcgcaggattcgacttaccagggtgaacgtgcataccaacatggtgga
gtgactggactgtcacagtactag
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