Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139409138
Help
Entry
139409138 CDS
T10872
Name
(RefSeq) protein strawberry notch homolog 2-like isoform X1
KO
K26273
protein strawberry notch
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139409138
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
139409138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
ResIII
Motif
Other DBs
NCBI-GeneID:
139409138
NCBI-ProteinID:
XP_071009989
LinkDB
All DBs
Position
5:complement(60289055..60394194)
Genome browser
AA seq
1520 aa
AA seq
DB search
MPTLPSHSLAMDGENYLHPEGPQLDSSMFEVASSNMESSMYPSASWGSFSQQSGGYSAHC
PMQSGNQQYHLNDTMPDMHIDMFSHSGFHDDFPCLNLPRNGGFPQDLSCIDDLSNNSLFS
SPADSLSEYADAQDFIHADNLAHVPTLWDINTPAQSQLELNANRFQGLSSLEDISAIIST
PPLGGYQVQRTQTPAEEEEEEEETEELGHVDTYADYKPSKSTIGISHPDIVVETNTLSSV
PPPDITYTLSIPNLTINCGLLSALQLEAIIYACQQHEVILQNNQRAGFLIGDGAGVGKGR
TVAGIILENYLKGRKKALWFSVSNDLKYDAERDLKDINAPTIPVHALNKIKYGDTATSEG
VLFATYSALIGESQAGGQRRTRLKQILDWCKPGFDGVIVFDECHKAKNATSTKMGKAVLD
LQHKLPLARVVYASATGASEPKNMIYMSRLGIWGDGTPFKTFDDFLHAIEKRGVGAMEIV
AMDMKVSGMYIARQLSFSGVSFRIEEISLDDDFKLVYNKSAKLWAETLAVFMRAADELCL
VSRKSLWGQFWSSHQRFFKYLCIAAKVRCLVELANKELEAGKCIVIGLQSTGEARTREVL
DENDGHLDRFVSAAEGVFKALVQKHFPSEKPRREKAPGNKRKRKPRGRQPKFPKHTMVDP
GGVINISDDSSTDTDGMDTDSNSSPDSLLDNNNDDDVIFVDTRIEEMKQDLLNKIADLGK
ELPLNTLDELIDKLGGPEKVSEMTGRKGRVVRRPDGSVRYESRAEQSHTIDHINLKEKDR
FMCGEKLVAIISEAASSGISLQADKRVKNQCRRVHMTLELPWSADRAIQQFGRTHRSNQV
TAPEYIFLISELAGERRFASIVAKRLESLGALTHGDRRATESRDLSKYNFENKYGTKALD
KITKAILGHIESKVSPPKGYPGGDSLFFRDMKHGMMDVGIFCKEPRFGLSTEKDCSITKF
LNRILGLEVHKQNSLFQYFTDNFDYLIEKDKKEGKYDMGILDLAPGNDEIYEEKQETFMT
VGNPQDGQVVLYKISVDRGMPWEEAYEKAQNLNSLDEGFYLSYKLRGNHPCVLLAEQGRG
RNFIVYKPNIGKQAHPESLDNLQQRYRKVTPDQAKDSWESQFNFSFGKCSHANWNGKCKK
IEEGQECLQGMRLRQYHMLCGALLRVWKRVADVVSDITSSSILQIVRLKTKNSNKQVGIK
IPENCVARVRVELLKMDEEVKRRRKEREQHAQEQRLAEQRQLQDIHLLAKPYSQPHSQSQ
SHRTQNFHQSLIQAKPLQVKPLLQPKPQPSPINQLPSMASIFSHFPHHFPSLPPMQPAPT
STTKPFRVGEEVLDLTVSSSPSPDSTEGVLGLISLTGGSDFDLERLISRHALAAQNTAHI
LQQPLQPPLIKQRQLQSPQQIQPQLQQWSDQPLINSAHQDYYILDHPDSLPYSLSSQTAT
NPSTSSTSSSSSNTVAHVSSPSHFSSSALAPSEQQPLPLANSHCSTDTLINAREVLDNMM
RTSVDRQSVIQYQPNEWDSA
NT seq
4563 nt
NT seq
+upstream
nt +downstream
nt
atgcccacactcccgtcacactcactggccatggacggggagaactacctgcacccagag
gggccgcagctggacagcagcatgttcgaagtggcctcttccaatatggagagttctatg
tatccttctgcttcctggggatcattctcacagcagtctggaggctacagcgcacactgc
cctatgcaatctggaaaccagcaataccacttgaatgacaccatgccggatatgcacatc
gacatgttcagccattctgggttccatgacgatttcccctgcctcaacctccccagaaac
ggaggcttccctcaggacctgtcctgcatcgatgacctctccaacaactctctgttctcc
tctccggccgactctctgtcagagtacgccgatgcccaggacttcatccacgcagacaac
ctggcccacgtgcctacactatgggacataaacacaccagcacaaagccagctggagcta
aatgccaacaggtttcagggtttgagcagtttggaggatatctctgccattatcagcacc
ccacctttgggaggataccaggttcagagaacccagactccggcagaagaggaggaggag
gaggaggagacagaggagctgggacatgtagacacttacgccgactacaaaccatccaaa
tctaccatagggatctcccacccagacatagtggtggagaccaacacgctgtccagcgtc
cctcctcctgacatcacctacactctatccattcctaacctcaccatcaactgtggcctg
ctctctgccctgcaactcgaggccatcatctacgcctgccagcaacatgaggtgatcctg
cagaacaaccagagagcaggcttcctgataggagacggggccggagtggggaagggccgt
acggtggccggcatcatcctggagaattaccttaaaggaaggaagaaagcactatggttc
agtgtgtccaatgacctgaaatacgacgcagagagagatctcaaagacataaatgctccc
actattcctgtgcatgccttaaacaagataaagtatggcgacacagctacctcagaagga
gtcctgtttgcgacatactctgctctgattggtgagagtcaagcaggagggcagcgccgc
accagactcaagcagatcctggactggtgcaagcccggctttgacggcgtcattgtgttt
gacgaatgccacaaggccaagaatgccacgtccaccaagatgggcaaggccgtgctggac
ctgcagcacaagctgcccctggccagggtggtttatgccagtgccacaggtgcctctgag
ccaaagaacatgatttatatgagccgcctggggatctggggcgatggcacgcctttcaag
acctttgatgatttcctgcacgccatcgagaagaggggtgtgggcgccatggagattgtt
gcaatggacatgaaggtgagtgggatgtacatcgcccggcagctgagcttctcaggggtg
tccttccgcatcgaggaaatcagcttggacgatgacttcaaactggtctacaacaaatct
gccaaactgtgggcggagactctggccgtgttcatgcgtgcagcggatgagctgtgcttg
gtcagcaggaagtccctgtggggtcagttctggtcttctcaccagcgcttcttcaaatac
ctctgcatcgccgccaaggtccgctgcctggtggagctggccaataaggagctggaggct
ggcaagtgcattgtgattggtctacagtctacaggagaggcccgaaccagagaggtcctg
gatgagaacgatggacacctggacagattcgtatccgcagcagagggggtgttcaaagct
ctggtacagaaacactttccctctgagaagccgaggagagagaaagcgcctggaaacaag
agaaaacgtaagcccaggggccggcagcccaagttcccaaagcacaccatggtggatccg
gggggtgtaatcaacatcagtgacgacagcagcacggacacggacggcatggacaccgac
tccaactcctcacccgactccctgctggacaacaacaacgacgacgacgttatcttcgtc
gacaccaggatagaggagatgaagcaggacctcctgaacaagatcgctgacctggggaag
gagctacctctgaacactctggatgaactcatcgacaagttgggaggtccagagaaagtc
tcggagatgactggtcgtaaggggcgtgtggtgcgacggcctgacgggagcgtgcgctac
gagtcgcgtgcggagcagagccataccatcgaccacatcaaccttaaggagaaggaccgc
ttcatgtgcggagagaagctggtggccatcatctcagaggcggccagctcgggcatctcc
ctgcaggcagacaagcgggtgaagaaccagtgtcggagggtccacatgacactggagctg
ccctggagtgcagacagagccattcagcagtttggtcgtacccatcgctccaaccaggtg
acggctccagagtacatcttcctcatctctgagctggccggggagagacgctttgcctcc
atcgtggccaagagactggagagcctgggtgcattgacccacggtgacaggagagccaca
gagtccagagacctgagcaaatacaactttgaaaacaagtatggtaccaaggctctagat
aagatcaccaaagccatcctgggtcacattgagagcaaggtgtcccctcccaaaggctac
cccgggggcgattccctgttcttcagagacatgaagcatggcatgatggacgtgggcatc
ttctgcaaggagcctcgctttggtctcagtactgagaaagactgcagcatcaccaagttc
ctcaacaggatcctgggcctggaggtccacaagcagaactctctgttccagtacttcact
gacaactttgactacctgatcgaaaaggacaagaaggagggcaaatacgacatgggcatc
ttagatctggccccaggtaacgatgaaatctatgaggagaaacaggaaaccttcatgacg
gtgggtaacccccaggacggacaggttgtgctctacaagatcagcgtggatagagggatg
ccctgggaggaggcctacgagaaggcccagaacctcaacagtcttgacgaaggcttctac
ctctcctacaagttgcgggggaaccacccttgtgtgctgctggcggagcagggccgaggg
aggaacttcatcgtctacaagcccaacatcggcaagcaggcccaccctgagagcctggac
aacctgcagcaacgctaccgcaaggtgaccccagaccaagccaaggacagctgggagagc
cagttcaacttctcctttgggaaatgtagccatgctaactggaacgggaagtgtaagaag
atcgaggagggacaggagtgtctgcagggtatgcgtctgcgccagtaccacatgctgtgc
ggggcgctgctgcgtgtctggaagcgcgtggctgacgtggtctctgacatcaccagctcc
agcatcctgcagattgtacgcctcaaaaccaaaaatagtaacaagcaagtcggtataaag
atcccagaaaactgcgtggcccgtgtgcgagtggagcttctcaaaatggatgaggaggta
aagaggaggcgcaaggagagggagcagcatgcccaggagcagaggctagccgagcagcgg
cagcttcaggacatacacctgcttgccaagccctacagccagccccacagccagtctcag
agccacaggactcagaacttccaccagagcctgatccaggccaagcctttacaggtcaag
cctctactacagcccaaaccccagcccagcccgatcaaccagctccccagcatggccagc
atcttctcccacttcccccaccacttcccctccctgcccccaatgcagcccgctccaacc
tccaccaccaagcccttccgggttggggaggaggtcctggacctgacggtgagctcctct
ccctccccagacagcacggagggagtcctgggcctgatcagcctgacagggggctccgac
tttgacctggagagactgatatcgcggcacgcactcgccgcccagaacacagcacacatt
ctgcagcaacctctacagccaccgctgatcaaacagcggcagctacagtcgccacagcag
atacaaccacagctacagcagtggtcagatcagcctttaatcaacagcgcccaccaggac
tactatatccttgaccatccagactctctgccttactctctgtccagccagacagctact
aacccctccacctcttctacctcttcctcttcctccaacacagtggctcatgtctcgtcc
ccctctcacttctcctcctcggcccttgccccctcagaacagcagcccctccctctagcc
aacagccactgcagcacggacacactcatcaacgcgcgcgaggtcctggacaacatgatg
cggaccagtgtggaccgccagtcagttatccagtaccagccgaacgaatgggactctgcg
taa
DBGET
integrated database retrieval system
