Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139409221
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Entry
139409221 CDS
T10872
Name
(RefSeq) neurogenic locus notch homolog protein 2
KO
K20994
Notch 2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
139409221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_TEN
EGF_CA
EGF_2
Ank_2
Ank
Notch
NOD
NODP
Ank_5
Ank_3
EGF_3
Ank_4
EGF_Teneurin
EGF_DL_JAG
JAG1-like_EGF2
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
139409221
NCBI-ProteinID:
XP_071010172
LinkDB
All DBs
Position
5:64593419..64652471
Genome browser
AA seq
2488 aa
AA seq
DB search
MGQLPGFASDKVLVFVVCCIRLSLALQCLDAVKPCVNNATCATFTNGTGYCRCAAGFLGE
YCHHKDPCHPGYCLNGGNCSVAVLGIPGSPTCSCPLGYTGQHCQTPQNSTCYPNNPCANR
GVCTLLSLDKYKCQCAHGWTGIRCERVDTCLPGPCANGGTCSSLSGDKFSCTCPPGYWGP
RCLNDTDECAASAPVCQNQGACVNTPGSYRCNCAPGFTGRHCETPYIPCAPSPCLNGGTC
RQTSETSYWCHCLPGFNGTNCDNNIDDCPDHHCRNGGTCMDGVNTYNCKCPPEWTGQSCT
EDVDECRLQPNTCQNGGTCSNIQGSYTCVCVNGWSGLDCSENIDDCATAACTKGSTCIDR
VASFLCVCPYGKTGLLCHVNDACISSPCRDGAQCDTNPINGMFNCNCAPGYKGSTCNDDI
NECIIGPNPCEHGGLCVNTDGSFTCNCARGYGGPRCETDINECVSSPCQNDGTCLDRIGD
YSCICMEGFEGTHCEIDINECASSPCLNQGICLDQVKRYVCQCPLGFSGEMCQIDIDECS
STPCLNGAKCIDRPNGYECECAEGFYGPLCKENIDDCDPEPCHHGVCRDGIATFSCDCDP
GYTGSICNIQVMECHSLPCQNRGRCIDLVNKYQCNCLPGTSGVNCEINVDDCASNPCEYG
ECQDGINEYKCVCAPGYTGAKCDVDINECNSSPCMSGGTCVDKVNGFICQCPPGTHGPLC
HSGTDHCAPRPCVHGDCVEQQSGYHCECESGWVGQHCDQEKDECQSSPCQHSGSCVDRLN
GYSCQCRPGFTGVNCEVNIEECASSPCENHGTCVDGVNSYTCLCAAPYSGKHCEEELVPC
ASHPCERGGVCQPTPDYTFYTCRCPSGWQGPRCTEDVDECRKNPCQNSARCINSQGSYVC
KCQPGYSGLNCQTNIDDCSPNPCLNGGSCVDGVGGFSCDCRPGFDGERCEAEMDECASQP
CRNGAVCRDYVNSFVCECRPGFDGILCEHNIPECTESSCLNNGTCVDDINTFSCRCRPGF
YGTFCQYEQNECDSQPCKNGGTCTDGLGSYRCTCPVGYNGQNCQNFVNLCSQPLCRNGGS
CSQSQTTWSCHCPVGWTGLYCDVPNMSCQDYAARNGIPVEMVCKHMGRCVNVGNAHQCQC
QPGYTGSYCDKTVDECQSNPCRNGATCMDYQGTYECMCKAGYQGVNCEYDVDECHSNPCR
HGGTCINLINRFSCACPPGTHGVQCEVNMDDCAPKPGSWGPRCLNGGQCMDGVGRYTCSC
PPGFAGEHCEGDVNECLSGPCHSPGSLDCVQLANDYQCRCRLGYTGRLCESMVDLCQSKP
CHNSGTCSMNMSSVHGYSCTCQPSFTGFNCGEVEGYNCAQLRCQNGGHCQDSQGGQLHCR
CQPGFSGSRCETVHSCQNRPCLNGGTCMKDPHNPYQYSCRCPAHFSGRHCENAIFDQTPR
TPSCPYVECEQRSGDKVCDPQCNNHECQWDGGDCSLHWRRPWVNCTASVPCWELFRNGRC
DHECDNSGCLFDSFECQESTKSYCKYDDYCADHYANKICDKSCNTEACGWDGLDCSEDTP
AKVVDGTLVIVVLLQPEELLGDVRGFLRSLGTLLHTNLRVKMDAQQKLMVYPYYGLEHDN
TIEGQSATMKRRGKRELDKEVIGSKVYLEIDNRECAESSMDCFSSTELAASFIAAEYLKS
ALPYPVVSVDSDHMDPQKPPFMLYLAVGAAVIILLILVLGVLAAKRKRKHSILWLPDGFL
AKKDDKRREPLGQDDFGMKNFKTQDGGMMDGGQRWMEEEAPPKKSRTEDKPLLPLGVDGG
VDRREWTLQHHKAADISLTPPQADLEADCLDVNVKGPDGFTPLMLASLRNGGASDCGLQA
EEEEESGGDEPGPNVISDLITQGATLIAQTDRTGETALHLAARYARADAAKRLLDAGADA
NAHDNMGRTPLHAAVAADAQGVFQILIRNRATELDARMNDGTTPLILAARLAVEGMVEEL
VHCHADINAVDDHGKSALHWAAAVNNVEATLVLLKNGANRDMQDNKEETPLFLAAREGSF
EAAQVLLDHYSNRDITDHLDRLPRDTAQERMHHDIVRLLDQYNLVHSPHNGPNHMGGGVG
HSLVCGGNGAGYMGMRPGPQGKKSRRGGVKVGGPGGGTAKELKDMKAKRRKKPTGGEGPA
VGAVGGASGNGTKAAGGLSESSVTMSPVDSLESPHSYTGDAAVASNTANSPPLLSSPSSR
PLLPPVSHMLGQQQSWLGLKHGYGGHMFSLLPQQMGNGHSGISQHHGQGLLTPMNVTMSR
EQLPPIVTFQMMAPGGGQSLLKQPQPGQVQSQGQNQGQPCSQQGPTHLHCTQGMMYQMPG
VGLQHSLSHSLPHSHGLAHSHGMVHDGQSHQQLPPYQAIQSPVDKYPTPPSQHSYATAGS
EGTTPGHPAHPPSEHPYLTPSPESPDPWSSSSPHSNSDWSDVTTSPTPLGNPHALPPPRH
THIPEQPQSQQTQQNPQQPQHGNMQVFV
NT seq
7467 nt
NT seq
+upstream
nt +downstream
nt
atgggccaattacccggttttgcttcggacaaagtattagtcttcgtcgtctgctgcatt
cggctttctttggctcttcagtgtctggatgctgttaagccgtgtgtgaacaatgctacg
tgtgccaccttcaccaacgggacagggtactgcaggtgtgccgcaggcttcctgggtgag
tactgccatcacaaagacccgtgtcatcctggttactgtctgaatggagggaactgctca
gtggctgtgttgggcatcccgggcagccccacctgctcctgtcccctgggctacaccggg
cagcactgtcagaccccccagaactccacctgctatcccaacaacccttgtgccaacaga
ggagtctgcaccttgctctccctcgacaagtacaagtgccagtgtgctcacggatggaca
ggcatacgatgtgagcgtgtggacacctgtctaccaggaccctgtgctaacggaggcacc
tgcagctctctgtccggggacaagttcagctgtacctgtcctccaggctactggggtcct
cgctgcctcaacgacactgacgagtgtgctgcctccgccccggtgtgtcagaaccaaggg
gcgtgtgtcaacactcccggctcctacaggtgtaactgcgcccccgggttcaccggccgc
cactgtgagaccccctacatcccctgcgccccctcgccctgcctcaatgggggcacgtgt
cgccagacttctgagaccagctactggtgccactgcctgccaggtttcaatgggactaac
tgtgacaacaacattgacgactgccccgaccatcactgccgaaatggagggacctgcatg
gatggcgttaatacctacaattgcaaatgtcccccggaatggactggtcagtcctgtaca
gaggatgtggatgagtgtcgcctgcagcccaacacgtgtcagaacggggggacctgcagc
aacatccagggcagctacacctgtgtgtgtgtcaatggctggagtggcctggactgctct
gagaacatagatgactgtgctacggctgcctgcaccaagggctccacctgtatcgaccgt
gtggcatccttcctctgtgtctgcccctacggaaagacaggtttgctgtgccacgtgaac
gatgcctgcatcagtagcccgtgcagggacggggcacagtgcgacaccaaccccatcaac
ggcatgttcaactgcaactgtgccccaggctacaagggaagcacctgcaatgacgacatc
aacgagtgcatcattggtccaaacccctgtgagcatggaggattgtgtgtgaacacggat
ggctcgttcacatgtaactgtgcaagaggttatggtgggcctcgctgtgagacagacatc
aatgagtgtgtctccagcccctgccagaacgatggcacctgtctggaccgcataggagac
tacagctgcatctgtatggaaggatttgagggaacacactgtgagattgacatcaacgag
tgtgccagctctccatgtctgaaccaagggatctgtctggatcaagtcaaacgctacgtc
tgccagtgccctctaggattcagtggggagatgtgtcagatcgacattgacgagtgttcc
agcacgccctgcctcaacggggccaagtgtatcgaccgacccaacggatacgagtgtgaa
tgtgctgaaggcttctatgggccactgtgtaaagagaacatagatgactgtgacccggag
ccctgccaccatggtgtgtgtcgtgatggcatcgccaccttctcctgtgactgcgacccg
ggctacaccggctccatatgtaacatccaggtcatggagtgccacagcctcccctgccag
aaccgcggacgctgcatcgacctggtcaacaagtaccagtgcaactgtctgcctggcacc
tcaggggtgaactgtgagatcaatgttgatgactgcgccagtaacccctgtgagtatgga
gagtgccaggatgggatcaacgagtacaaatgtgtctgtgctccagggtacacaggtgca
aaatgtgacgtggacatcaatgagtgtaattccagcccgtgtatgagtgggggcacatgt
gtagacaaggtgaacggcttcatctgccagtgcccccctggcacccacggccccctgtgc
cactctggcaccgaccactgtgccccccggccctgtgtgcacggagactgtgtagagcag
cagagcgggtaccattgtgagtgtgagtctggctgggtggggcagcactgtgaccaggag
aaggatgagtgtcagtccagcccctgccagcacagtggcagctgtgtggacagactcaat
ggatactcctgccagtgtcgccccggattcacaggtgtgaattgcgaggtcaacatagag
gagtgtgcatcaagcccgtgtgagaaccatggtacctgtgtggacggagtcaacagctac
acctgcctgtgtgccgctccgtactcaggaaaacactgtgaggaggagttggttccctgt
gcgtctcatccatgtgagcggggaggtgtgtgtcagccaaccccagactacaccttttac
acctgtagatgtcccagcggctggcaaggccctcgttgcactgaggatgtggatgagtgc
aggaagaacccgtgtcagaacagcgcccgttgcatcaacagccagggcagttacgtgtgc
aagtgtcagccaggctacagcggtctcaactgccaaaccaacatcgatgactgctccccc
aacccgtgtctgaatggcggttcctgtgtggatggagtgggagggttctcctgtgactgc
cggccagggtttgatggggagcgctgtgaggcagagatggatgagtgtgccagtcagccg
tgccggaacggagccgtgtgccgggactacgtcaacagcttcgtctgcgagtgccggcca
ggtttcgacggaatcctatgtgaacacaacatcccagaatgcactgagagttcctgtctg
aataacgggacctgtgttgacgacatcaacaccttctcgtgtcgttgtcgtcctggtttc
tacgggaccttctgtcagtatgagcagaatgagtgtgactctcagccctgtaagaacgga
gggacctgtacagacggcctaggatcctaccgttgcacctgccctgtgggctacaacggg
cagaactgccagaactttgtgaacttgtgtagccagccactgtgcaggaacggagggtcc
tgttcccagtcacagaccacctggtcatgtcactgtcctgtgggctggactggtctgtac
tgtgatgtccccaacatgtcctgtcaggactatgctgctcggaatggtattccagtggag
atggtgtgtaagcacatgggtcgctgtgtgaacgtcggtaatgcccaccagtgtcagtgc
cagcctggctacacaggcagctactgtgacaagactgtggacgagtgccagtctaacccc
tgccgcaacggagccacctgcatggactaccagggcacatatgagtgtatgtgcaaggct
ggctaccagggggtgaactgtgagtatgacgtagatgagtgtcactctaacccttgtcgt
catggaggaacctgcatcaacctcatcaaccgcttctcctgcgcctgcccacctggtaca
catggtgttcagtgtgaggtgaacatggacgactgtgctcccaagcctggctcctggggg
cctcgctgtctgaacgggggccagtgtatggatggggtgggccgctacacctgctcctgc
ccccctggcttcgctggggaacactgtgagggggacgtcaacgagtgtctctctggaccc
tgtcactctcctggcagcctggactgtgtgcagctggccaacgactaccagtgccgctgt
cgcctgggctacaccggacgcctctgtgagtccatggtggatctgtgccagtctaagccg
tgccataacagtggcacctgttccatgaacatgagctcagtgcatggatactcatgcacc
tgtcaaccaagtttcactggcttcaactgtggagaggtagagggctacaactgtgcccag
ctgcgttgtcagaacggcgggcactgccaggattctcagggtggtcagctgcactgccgt
tgccagccaggcttcagtgggtcgcgctgcgagaccgtgcacagctgccagaaccgaccc
tgtttgaatggaggcacctgtatgaaggacccacacaacccataccagtacagctgtcgc
tgcccagcccacttctcaggcaggcactgtgagaatgccatcttcgaccagaccccccgc
accccctcctgcccttatgtagagtgtgagcagcggtccggggataaggtgtgtgacccg
cagtgcaacaaccatgagtgccagtgggacggaggggactgttctttacattggcgccgg
ccatgggtcaactgcaccgcctccgtgccctgctgggagctgttccgcaacggccgctgt
gaccacgagtgtgacaactctggctgcctcttcgacagctttgagtgtcaagagagcaca
aagtcctactgcaagtatgatgactactgtgcggaccactatgccaacaagatctgtgac
aagagctgtaacacagaggcatgtggctgggatggcctggactgctctgaggacacccct
gctaaggtggttgatggcactctggtgatcgtagtgttactgcagcctgaggagctgctg
ggagacgtgagaggcttcctgcgctccctgggaaccctgctgcacaccaacctccgtgtt
aagatggacgcccagcagaaactcatggtgtatccttactatggcctggagcacgacaac
accattgaaggacagtctgctacaatgaaacgtagaggcaaacgggagctggacaaggag
gttatcgggtctaaggtttacctggagatcgataaccgagagtgtgctgagagctccatg
gactgtttctccagcacagagctggctgcatccttcatcgctgcagagtacctgaagtct
gcgctgccctaccctgtggtctctgtcgacagtgaccatatggacccccagaagcccccc
ttcatgctgtacctggctgtgggagcagctgtcatcatcctgctcatcctggtgctgggt
gtgctggccgccaagaggaaacgcaaacacagcatcctctggctccccgatggcttcctg
gccaagaaagacgacaagaggagagagcccctgggccaggacgacttcggcatgaagaac
ttcaagacccaggatggagggatgatggacggaggccagagatggatggaagaggaggct
ccgcccaagaaatcaaggactgaggacaagcccctgctgccactgggtgtggatggagga
gtggaccgacgggagtggactttacagcaccacaaggctgctgacatctctctcactcca
ccacaggctgatctggaagcagactgccttgatgtcaatgtcaaaggaccagatggcttt
acccccctgatgctggcttctctacgaaacggaggggcgtctgattgcggcctgcaggca
gaggaggaagaggagagtgggggagatgagccgggacccaacgtcatctcagacctcatc
acccagggtgcaacactcatagcccagacagatcgcaccggggagacggcactccacctg
gctgctcgctacgcccgggccgatgccgccaaaaggctgctggatgccggggcagatgcc
aatgctcacgacaacatgggtcgcacacctctccacgctgctgtggcagccgatgcccag
ggagtgttccagatcctgatccgtaaccgggccaccgagttggatgccaggatgaacgat
ggaaccacacctctgatcctggctgccaggctggctgtggagggcatggtggaggaactg
gtccactgccacgcggacatcaatgctgtcgacgaccacggtaagtctgctctgcactgg
gcagctgctgtgaacaatgtggaggccaccctagtgctgctgaagaatggagccaacaga
gacatgcaggacaacaaggaggagaccccattgttcctggcagccagggagggtagtttt
gaggcggcccaggttctgctagaccactactctaatagggacatcacagaccacctggac
cggctgccccgtgacaccgcgcaggagcgcatgcaccatgacattgttcgtctgctcgat
cagtacaacctggtccacagccctcacaacggccccaaccacatgggcgggggagtggga
cactccctggtctgtgggggcaacggagcgggctacatgggcatgcggcctgggccccag
ggcaagaagagcaggcggggcggggtgaaggttggaggtcctggcggaggtacagccaaa
gagctgaaagacatgaaggctaagcggaggaagaagccaacaggaggagaagggcctgca
gtgggagctgttggaggagccagtggcaacggcactaaagctgcaggagggctgtcagag
agctcagtcaccatgtctcctgtggactccctggagtctccacactcatacacaggagat
gctgccgtggcatccaacacggccaactctcctcctctcctgagcagcccctcctctagg
cccctgctgcctcccgtcagccacatgctgggccaacagcagagctggctgggtttgaag
catggatacggcggccacatgttcagcctccttccccagcagatgggtaacggccattct
ggtatttcccagcaccacggccaaggcctgctcacccccatgaatgtcaccatgagccga
gagcagctgcctcccatcgttaccttccagatgatggcaccggggggtgggcagtccctg
ctgaagcagccccagcctgggcaggtgcagtcacaggggcaaaaccagggccagccctgc
tctcagcagggccctactcacctgcactgcacccagggcatgatgtaccagatgcccggc
gtgggcctccagcacagcctgtcccacagccttccccactctcacggcctggcccacagc
cacggcatggtgcatgacggccagtcccaccagcagctccctccatatcaggctatccag
agccctgtggataagtaccccacccctccctctcagcacagctacgccaccgctggctcg
gagggcaccaccccggggcacccggctcacccgcccagtgagcacccgtacctcaccccc
tcccccgagtcccctgacccctggtcctcttcttccccccactccaactcagactggtct
gacgtcaccaccagccccacccccctggggaaccctcatgcactgccgcctccccgccac
acacatattccggagcagccacagtcccagcagacgcaacagaacccccagcagcctcag
catggcaacatgcaggtgtttgtatag
DBGET
integrated database retrieval system
