Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139409255
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Entry
139409255 CDS
T10872
Name
(RefSeq) transcription factor Sox-2
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139409255
Transcription factors [BR:
ocla03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
139409255
BRITE hierarchy
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
139409255
NCBI-ProteinID:
XP_071010241
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Position
5:66497433..66499422
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AA seq
315 aa
AA seq
DB search
MYNMMETELKPPAPQTNSGGTGNSNSSGNNQKNSPDRVKRPMNAFMVWSRGQRRKMAQEN
PKMHNSEISKRLGAEWKLLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKD
KYTLPGGLLAPGGNGMGAGVGVGGGLGGGVNQRMDSYAHMNGWTNGGYGMMQEQLGYGQH
PGLNAHNNAQMQQMHRYDMSALQYNSMTNSQTYMNGSPTYSMSYSQQSTPGMTLGSMGSV
VKSESSSSPPVVTSSSHSRGAPCQTGDLRDMISMYLPGAEVPEQTAQSRLHMSQHYQSAP
VPGTTINGTLPLSHM
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgtataacatgatggaaactgaactgaaaccccccgcaccccagacaaattctgggggt
actgggaattcaaattcatctggaaacaaccagaaaaacagcccggaccgagtcaagaga
cccatgaatgccttcatggtttggtcgaggggacaacgaagaaagatggcacaggaaaac
cccaaaatgcacaattcggaaataagcaaaagacttggggccgagtggaagcttctatct
gagagcgaaaagcgacctttcattgacgaagcgaagcgtctccgggctctccacatgaag
gaacatccggattacaaataccgaccccggaggaaaaccaagacgctgatgaagaaggac
aagtacactctgccaggtgggcttcttgcaccgggcggcaatggcatgggcgcgggagtg
ggtgtagggggaggcttgggtggtggtgttaatcaaaggatggacagttacgcacatatg
aacggctggacaaatggaggttatggcatgatgcaggagcagcttggctacgggcagcac
cctggtttaaacgctcacaacaacgcgcagatgcagcaaatgcaccgctatgacatgagc
gcacttcagtacaactccatgactaactcccagacctacatgaacggatcacccacgtat
agcatgtcctactcacagcagagcactcctggaatgactctgggctccatgggttcggtg
gtcaagtcagagtccagttccagtccccccgtagtcacatcgtcgtctcactccaggggt
gctccatgtcagacaggagacctacgggacatgatcagtatgtacttacccggcgctgag
gtgccggagcaaactgctcaaagcagactccacatgtcccaacattaccagagcgcacct
gtacccggcacgacgattaatggcacactcccattatcacatatgtaa
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