Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139409279
Help
Entry
139409279 CDS
T10872
Name
(RefSeq) voltage-dependent R-type calcium channel subunit alpha-1E-like
KO
K04852
voltage-dependent calcium channel R type alpha-1E
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04010
MAPK signaling pathway
ocla04020
Calcium signaling pathway
Brite
Ion channels [BR:
ocla04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
139409279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
139409279
NCBI-ProteinID:
XP_071010290
LinkDB
All DBs
Position
5:complement(68168506..68387158)
Genome browser
AA seq
2490 aa
AA seq
DB search
MLELGSCSVSAQTLADHNALAVPHLARGGVCGSSNPRHYILHPESENWRKHRLGLTEGSH
SCSLLEPQSLSDSLLSHTSSFNTLYLPHNAHAPHGLSLDVASSYDSAGEALVMDPDRPVS
PIIIKRRRGGLIEQRDIVKAHQAHKIQSTPQALRKEWEMARFGDDVPGLLGSGDGGSERN
RTREGPALSTGGGVSPAFKQTKAQRARTMALYNPIPVRQNCFTVNRSLFIFGEDNIVRKY
AKKVIEWPPFEYMILATIIANCIVLALEQHLPGEDKTPMSKRLEKTEPYFIGMFCFEAGI
KVVALGFVFHKGSYLRNGWNVMDFIVVLSGILATAGAHMNIPVDLRTLRAVRVLRPLKLV
SGIPSLQIVLKSIMKAMVPLLQIGLLLFFAILMFAIIGLEFYSGKLHNTCLPMPNILENE
TVDKSESEFPCGVRKCPDKYACSETWIGPNDGITQFDNILFAVLTVFQCITMEGWTTVLY
NTNDALGPTWNCMYFIPLIIIGSFFVLNLVLGVLSGEFAKERERVENRRAFMKLRRQQQI
ERELNGYRAWIDRAEEVMLAEENKNLGPSALDAPKRLSEWNTGGNHVLKRTTIKRRGVDA
VHRGPEEEQYGDISSVGIPMTRASIRSAKRGPTAYFKRKERLLRISIRRMVKTHTFYWTV
LGLVALNTLCVAIVHHNQPHWLSVFLYYAEFLFLGLFLTEMCLKMYSLGPRLYFHSAFNR
FDCGVIVGSIFEVMWGFFRPDMSFGISVLRALRLLRIFKITKYWASLRNLVVSLMNSMKS
IISLIFLLFLFILVFALLGMQLFGGRFIFEDYTPTNFDTFPAAIMTVFQILTGEDWNEVM
YNGIRSQGGVKSGMWSSIYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKDEEDEEAAF
NQKHALQKAKEVGAMSSLMSSHRRRRPYLYRKRAIHRSRPAYSLEEAESLAEGPPCPPLN
SSNSFMSRGERRRRMTMSVWEQRTSQLRRHRQMSSREILFSSPSEEQEAPPGCPHNLKAT
GTPTGSLKLADPTADPTASTAQPPKPMDQTLEEPPLSMGVLEPPLSLPLAEPPIPIDSPL
PDPPTSTVVSIPEPTESEPCPEGQLDDTDHCHPGLNGRRSPRLNGERRQRAVRKFRPPAG
DTLTPDMAGMRLRRPRGTGHHEAQGEGSSRSVSKERKTPEERQDKERRACNTGETSQPSE
TREAEHRQGDPNQAGGPELQNMEEGPQSEPPPINPNPAVPELPEGQTRDSDTGNNATTLN
QDKSPLSSSIYIEVTNVQSSLELTPITGNSKDMEASKPEKEEEQLTSPANIVTPDSMFIF
KPGNPIRRACHYVVNLRYFETCILLVIAASSIALAAEDPVSATSNWNKVLRYFDYVFTGV
FTFEMIIKMIDQGLILHDGSYFRDLWNILDFIVVVGALVAFALTNNKGRDIKTIKSLRVL
RVLRPLKTIKRLPKLKAVFDCVVTSLKNVFNILIVYKLFMFIFAVIAVQLFKGKFFYCTD
GSKDTEKDCQGFYIDYEKDKKEVKRRDWRRHDFHYDNIVWALLTLFTVSTGEGWPQVLQH
SVDVTEEDRGPSRGNRMEMSIFYVIYFVVFPFFFVNIFVALIIITFQEQGDKMMEECSLE
KNERACIDFAISAKPLTRYMPQNRQTFQYRLWHFVVSPSFEYTVLAMIALNTIVLMMKYY
SAPPAYEAVLKHLNTAFTVLFSVECVLKIMAFGFLNYFRDTWNIFDFITVLGSITEIVVD
LQSIETFNMGFLKLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAI
IGMQVFGNIRLDEETHINQHNNFKTFFGALMLLFRSATGESWQEIMLSCLGGQKCEPDPL
ALTSDHEERCGTEFAYFYFVSFIFFSSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEF
VRIWGEYDRAACGRIHYTDMYEMLTLMSPPLGLGKKCPSKVAYKRLVLMNMPVDEEMSVH
FTSTLMALIRTALEVKIARGGEDRGQMDSDLQKEISVIWSHLSQKTLDLLVPIHKASHMT
IGKIYAAMMIMDYYKQSKAKKLRQQLEEQKHAPMFQRMDASSLPQEILCSAKALPFLPHS
PGSALTRGGFVALSPISPQEMFMQPMSQDLEDREEDYHNYHHHHLLHHQLHTLVPERKEF
NRNLCPTNRQDAPLRVPGRAVSIRASSMPRLAVDTQVGTDSSKSMKRSFSTIGDQCVNGL
WQEEYSLKRVSPDRLNRPRQRSIRGIRCNLREPVDHERGRSKERRHLLSPDVSRCNSEER
SQDPSQERKQSRSPSEGRTHALHRQGNTSGSPDLSSTPRGRRQLPQTPLRPRPHISYSPL
VCRAHLSPPAASEGRARTQEAPGETEDPSLREEGERLAPESGAGVGVAIGVGGPGLGVSH
PHHSPHRYISEPYLTLHEELHSPDSSGLDETLTFEAAIATSLGRANTISSAPQLRHNWQV
PNGHFHKRLGQASSVVACELLSDTDEDDRC
NT seq
7473 nt
NT seq
+upstream
nt +downstream
nt
atgttggaattgggctcctgttcagtcagtgctcagaccctggcggaccacaatgccctg
gcggtgccccatctggccagggggggcgtctgtgggagcagcaacccacgccactacatc
ctccaccccgagtcagagaactggcgcaagcaccgtctgggcctgaccgagggttcccac
tcctgctccctgctggaaccccagagcctgtcagacagcctgctttcccacacatccagc
ttcaacaccctctacctcccccacaatgctcatgccccccatggcctctccctggatgtg
gccagctcctacgacagtgccggggaagcgctggtgatggacccggaccgacccgtcagc
cccatcatcattaaaaggcgccgggggggtctcatcgagcagcgggacattgttaaagcc
caccaggctcacaagattcagagcaccccacaggccctgcgcaaagaatgggaaatggcc
cggttcggagacgacgtccccggcttgttgggctctggggatgggggctctgagcgcaac
aggacccgggagggaccggctctgtctacaggtggtggagtgtccccagccttcaaacag
accaaggcgcagagagcccgcaccatggccctgtacaaccccatccctgtcagacagaac
tgtttcaccgtaaatagatcactcttcattttcggagaggacaacattgttcggaagtac
gcaaagaaggtcatagagtggcctccgtttgagtacatgatcttagccaccatcatcgcc
aactgtatcgtactggctttggagcagcacctgcctggagaggacaagactcccatgtcc
aagagactggaaaagacagagccttacttcattgggatgttctgctttgaagctgggatt
aaggttgtggcgttgggatttgtattccataaaggatcctacttgaggaacggctggaac
gtcatggacttcattgtggttctgagtgggattctggccacagcgggagctcacatgaac
atcccagtggacctgcggaccctgcgggccgtacgcgtgctcagacccctcaaactggtc
tctggaatccccagcctgcagatagtcctgaaatccatcatgaaagccatggtgccgctg
ctccagatcggcctgctgctcttctttgccattctcatgtttgccatcatcggcctggag
ttctacagtggaaagctccacaacacctgtctgcccatgccaaatatcctggagaatgag
acggtggacaagtcggagtcagagttcccgtgtggggtgaggaagtgccctgacaagtac
gcctgcagtgaaacctggatcggccccaacgatggcatcacccagtttgacaacatcctg
tttgctgtgctcaccgtcttccagtgcatcaccatggagggctggaccaccgtgctctac
aataccaacgatgccttaggccccacgtggaactgcatgtacttcatccctctgataatc
atcggctccttcttcgtgctgaacctggttttgggagttctctcaggggagtttgccaag
gagagggagcgggtagaaaaccgcagggcattcatgaagctcaggaggcaacagcaaatt
gagcgggaactcaatggctaccgagcctggatcgacagagcagaagaggtgatgcttgcg
gaggagaacaagaatttaggaccttctgctcttgatgctcccaagaggctgtctgaatgg
aatacaggcggtaaccatgtgctgaagaggaccaccatcaagaggagaggggtggatgcc
gtccatcggggcccagaggaggagcagtacggtgacatctcttctgtgggcatcccgatg
accagagccagcatcaggagtgctaagagaggacccacggcttatttcaagcggaaggag
cgtctgctgcgtatctctatccgccgcatggtgaagacacacaccttctactggaccgta
ctgggcctggtggccctcaacacactctgtgtggccatcgtccatcacaaccagccccac
tggctgtctgtgttcctctactatgcagagtttctcttcctgggtctgtttctcactgag
atgtgtttaaagatgtacagcctgggacccagactctacttccactccgccttcaaccgc
ttcgactgcggcgtgatagtgggcagcatctttgaggtgatgtgggggttcttcaggcca
gacatgtccttcggcatcagtgtgctgcgcgctctccgtctgctgaggatattcaagatc
accaagtactgggcgtcgctgaggaacctggtggtatccctgatgaattctatgaagtcc
atcatcagcctcatcttcctcctcttcctcttcatcctggtctttgctctgctgggcatg
cagctattcggtggcaggttcatctttgaagactacactcctacaaattttgacacattt
cctgctgccatcatgactgtctttcagatcctgacaggagaagactggaatgaggtgatg
tacaatgggatccgctcccagggaggagtgaagtcaggaatgtggtcctccatatacttc
attgtgctcacactctttggtaactacacactgctgaatgtcttcttggccattgctgtg
gacaatctggctaatgcacaggaactaaccaaggacgaagaggacgaagaggctgctttc
aatcagaaacatgctctccaaaaagccaaggaagttggggccatgtcttccctgatgtca
tcacacaggaggaggagaccttacctgtacaggaaaagagcgatacacaggagccggcct
gcctactctctggaggaggctgagagcctcgccgaggggccaccctgcccgccattgaat
tcctctaactctttcatgtccaggggagagaggagaagacggatgaccatgtctgtgtgg
gagcagagaaccagccaactgcgcaggcaccggcagatgtccagccgagagatcctcttc
agcagccccagtgaggagcaggaagcgccccctggatgcccccacaacctcaaagccaca
ggcacacccacaggcagcctgaagctggctgaccccacggctgaccctacggcctccaca
gctcagccccccaagcccatggaccaaactctagaggagccacccctgtccatgggggtc
cttgagccccccttgtccctccctttagcagagccacccatacccatcgacagtcccctg
cctgacccccccacgtccacagttgtgtccattccggagcccactgaatctgagccatgc
ccagagggccagcttgatgacaccgaccactgccacccaggtctcaatggccgcaggagc
cccaggttaaatggggagagaaggcagagagcagtgcgtaagttccgccctcctgctggt
gacaccctgacccctgacatggcagggatgaggctcaggaggccaaggggcacagggcac
cacgaagcccagggggaggggagcagtcgctctgtcagcaaggagagaaagaccccagag
gaacgacaggacaaggagaggagagcctgtaacacgggagagaccagccagccttctgag
accagagaagctgaacacagacagggtgaccctaaccaggctgggggtcctgagctgcag
aacatggaggagggtccacagtcagaaccaccccccattaaccctaaccctgcagtaccg
gagctcccagagggccagacaagagacagtgatactggtaacaacgccaccactctgaac
caggataagtcccctctgagctccagtatctacatagaggtgaccaatgttcagtcttca
ctagagctcacccccatcacaggtaacagtaaagacatggaggcgtccaagcctgagaaa
gaagaggagcagttgaccagcccagccaatattgtcacgcctgacagcatgttcatcttc
aaacctggcaacccgatccgccgggcctgtcactatgtggtgaacctgcgttactttgag
acatgcatcctgctggtgatcgctgccagcagtatcgccctggctgcagaggaccccgtg
tcagccacctctaactggaacaaagttttgcgttactttgactacgtgttcacaggtgtc
tttacatttgaaatgataataaagatgatagaccagggcttgattctccatgacggctcc
tatttccgggacctgtggaacattctagactttatcgtggtggtcggagctctggtggcc
ttcgccctcacaaataataaaggacgggacatcaaaaccatcaagtctcttcgggtcctg
cgtgtcctgaggcccctgaagaccatcaagagactaccgaaacttaaggcagtgtttgac
tgtgtggtgacctctctgaagaacgtcttcaacatcctcatcgtctacaagctcttcatg
ttcatcttcgctgtcatcgctgtgcagctgttcaaaggaaagttcttctactgcacagac
ggatccaaagacacagagaaggactgccaaggcttctacattgactatgagaaggataaa
aaggaagtgaagagaagggattggaggagacatgacttccactatgacaacatagtctgg
gccctactcactctgtttactgtctccactggggagggctggccacaggtcctgcagcac
tctgtggacgtgacagaggaggacagaggtcccagcaggggcaacaggatggagatgtcc
atattctatgtaatctactttgtggtcttccccttcttcttcgtcaacatctttgtggct
ctcatcatcatcaccttccaggagcagggagacaagatgatggaggaatgcagcttggag
aagaacgagagggcttgcattgactttgccataagtgccaaacccctgacccgctacatg
cctcagaacaggcagacgttccagtaccgcctctggcactttgtggtctccccctctttc
gaatacactgtgctggccatgattgcactcaacaccattgtcctgatgatgaagtattac
tctgccccaccagcatacgaggctgtgctgaaacatctgaacacagctttcactgtgctc
ttctctgtggagtgtgtcctcaagatcatggcctttggctttctgaactactttcgagac
acttggaatatattcgacttcatcacagttttgggaagcatcacagaaatagtggtagac
ttgcagtcaattgagaccttcaacatgggtttcctgaagctgttccgtgcagccagactg
atcaagttgttgaggcagggttacaccatccgcatcctgctctggacctttgtccagtcc
tttaaggctctcccctacgtttgtctgctcattgccatgctctttttcatatatgcaatc
atcggaatgcaggtttttggaaacatcagactggatgaggagactcacatcaaccaacac
aacaacttcaagaccttttttggtgctctgatgttgctattcaggagtgccacgggggag
tcgtggcaggagatcatgctgtcatgtttaggggggcagaagtgtgagccagacccctta
gctctaacatcagaccacgaggagcgctgtggaactgagtttgcctacttctactttgtc
tccttcatcttcttcagttcatttctgatgctgaatctgtttgtggctgtaatcatggac
aactttgagtacctcacccgggattcctcgatattggggcctcaccacctggatgaattt
gttcgtatctggggtgaatatgaccgagctgcttgcgggcgtattcattacactgacatg
tatgaaatgctgaccctcatgtcgccacctctaggcctcggcaagaaatgtccatccaaa
gtggcttataagaggctggtgctaatgaacatgcctgtggatgaagagatgtcggttcac
ttcacctccaccctcatggccctgatccgaaccgccctcgaggtgaagatagccagagga
ggggaggaccgaggtcagatggattcagatctacagaaggagataagtgtcatttggtca
cacctttcacagaagaccctggacctgctcgtccccattcacaaagccagtcatatgacc
attgggaagatctatgcagccatgatgatcatggactactacaagcagagcaaagccaag
aagctcaggcaacagctggaggagcagaaacacgctcccatgttccagcgtatggacgcg
tcctctctgcctcaagagatcctctgcagtgccaaagccctccctttcctgccccacagc
cctggatctgccctgaccagaggaggatttgtggccttgagtcccatatcccctcaggag
atgttcatgcagcccatgtcccaggacctagaggacagagaggaggactaccacaactat
caccaccaccacctgctccaccaccagctccacacactggttccggagcgcaaagagttt
aaccgcaacctttgccccactaacaggcaggatgccccactcagggtgcccgggcgggca
gtctctatccgagcctcctctatgcctcggctggctgtagacacacaggtggggacagac
agcagcaaatcaatgaagcgctccttctccactattggggatcaatgtgtgaatggcctg
tggcaggaggagtactctctgaagagggtcagtcctgaccgtctgaacagaccacgacag
aggagcatcagaggaatcaggtgcaacctcagggaaccagtggatcatgagcgggggcgc
tccaaagagaggcgtcacctgctgtctcccgacgtgtcccgctgcaactctgaggagcgg
agccaggacccgtcacaagaacgcaagcagtcccgttcccccagcgagggacgcacacat
gccctccacagacagggcaacacttcaggcagcccagacctgtccagcacaccccgcggc
cggcgccaactcccccagacgcccttgcggccacgccctcacatctcctactcccccctg
gtgtgcagagcccacctctccccccctgctgccagtgagggcagagcccggacccaggag
gcccccggagagacggaggatccctcgctgcgggaggagggggagaggctagccccagag
tcaggagcgggggtgggggtggcaataggggtgggtggcccagggttaggggtcagtcac
ccgcaccactcacctcaccggtacatctcggagccgtacctgaccctgcacgaggagtta
cacagcccagactcctcaggcctggatgagactctgaccttcgaggcggccattgcaacc
agtctgggccgtgccaacaccatcagttctgccccccagctcagacacaactggcaggtc
cccaacggacacttccataaacgcctgggtcaggccagctctgtggttgcctgcgagctc
ttgagtgacacggacgaggatgaccgctgttag
DBGET
integrated database retrieval system
