Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139409288
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Entry
139409288 CDS
T10872
Name
(RefSeq) replication factor C subunit 4-like isoform X1
KO
K10755
replication factor C subunit 2/4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03030
DNA replication
ocla03410
Base excision repair
ocla03420
Nucleotide excision repair
ocla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
139409288
03410 Base excision repair
139409288
03420 Nucleotide excision repair
139409288
03430 Mismatch repair
139409288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ocla03032
]
139409288
03036 Chromosome and associated proteins [BR:
ocla03036
]
139409288
03400 DNA repair and recombination proteins [BR:
ocla03400
]
139409288
DNA replication proteins [BR:
ocla03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
139409288
DNA Replication Termination Factors
ELG1-RFC complex
139409288
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
139409288
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
139409288
Check point factors
HRAD17(Rad24)-RFC complex
139409288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
Rad17
AAA_16
AAA_22
AAA_assoc_2
AAA_30
Mg_chelatase
AAA_11
RuvB_N
AAA_24
SLFN-g3_helicase
DUF815
AAA_28
AAA_14
AAA_5
Gp44_lid
AAA_19
Kinesin
Cdc6_lid
ResIII
AAA_7
ATPase_2
RPA_interact_N
bpMoxR
DNAX_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
139409288
NCBI-ProteinID:
XP_071010311
LinkDB
All DBs
Position
5:complement(68672548..68679330)
Genome browser
AA seq
357 aa
AA seq
DB search
MQAFLKGTSTQATRPLKEKGTGTSGEKKQKSVPWVEKYRPKCMEDVVFQEEVVAVLKKTI
EGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVREKVKRF
AQLTVAGHRTDGKPCPPFKIIILDEADSMTNAAQAALRRTMEKESRTTRFCLICNYVSRI
IEPLTSRCSKFRFKPLANQVQEERLLDICDKENLKYSKEGIAALVKVSEGDLRKAITFLQ
SAARLNTDNEITESAVIEIAGVVPPKMIDNLLKICYKGTFEKLEIAVRNMVDEGYAATQI
INQLHEAIIEEELNDKQKSAITEKMAVVDKCLVDGADEYLQMLSLCSVIMQQATLSN
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgtttttgaaaggaacatcaactcaagccaccagacctctgaaagagaaaggt
acagggaccagtggagagaagaagcagaaatctgtcccctgggtagagaaatatagacca
aaatgtatggaagacgtggtgtttcaagaggaggtggttgctgtgctgaagaagactata
gagggcgctgatctccccaatctgctgttctatggaccacctggaacaggaaagacctcc
accatcctggctgcagccagggaactttatgggccagagctgtaccgacagagagtgctg
gagctgaacgcctccgatgagagagggattcaggtggtgagagagaaagtcaagagattt
gcccagctgactgtagcaggccaccgcactgatgggaaaccatgcccaccctttaagatc
atcatcctggatgaggctgactcaatgaccaatgctgctcaggctgctctcagacgaacc
atggagaaggagtcccggaccacccgcttctgtctcatctgcaactacgtcagcaggatt
attgagcccttgacatccagatgctccaaattccgcttcaaacctctagcaaatcaggtc
caagaagagcgcctgctggatatctgtgacaaggagaatctcaagtactcaaaggagggt
attgcagcgttggtgaaggtttcagaaggggatcttagaaaagccataacctttcttcaa
agtgctgcacggctgaacacagataatgagatcacggagagtgcggtcatagagatagct
ggggttgttcctcccaagatgattgacaatttgctcaaaatctgttacaagggaacattt
gaaaaactagagattgctgttcggaacatggtagatgagggctatgctgccacacagatc
atcaaccagctacacgaagccatcatagaggaagagctgaatgacaagcagaagtctgcc
atcacggaaaagatggcagtggtcgacaagtgtttagtggatggtgcagatgagtacctg
cagatgctgagtctgtgttctgtgatcatgcagcaagccactctgagtaactga
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