Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139409346
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Entry
139409346 CDS
T10872
Name
(RefSeq) DNA mismatch repair protein Mlh1
KO
K08734
DNA mismatch repair protein MLH1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03430
Mismatch repair
ocla03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
139409346
03460 Fanconi anemia pathway
139409346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocla03400
]
139409346
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
139409346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mlh1_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
139409346
NCBI-ProteinID:
XP_071010462
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Position
1:complement(59789373..59806177)
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AA seq
725 aa
AA seq
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MSGVIRRLDETVVNRIAAGEVIQRPANAIKELLENCLDAKSTNIQVTVKEGGLKLIQIQD
NGTGIRKEDMEIVCERFTTSKLQTFEDLNAISTYGFRGEALASISHVAHVTITTKTADAK
CAYRATYCDGKLKTQPKPCAGNQGTQITAEDLFYNVSTRRKALKSPSEEYSRIVEVVSRY
AIHNSGKSFAVKKQGETMADVRTLPNASILDNIRVVFGNTVSRELIEVGCEDQKLAYKLK
GHISNANYSVKKCILILFINHRLVESSALKKAIETVYAAYLPKNSHPFLYLSLEIAPHNI
DVNVHPTKHEVHFLHEDCIVESVQRHIESKLLGSNSSRTYFTQTLLPGLSVSTSEGKSSS
NSTGDSERVYAHQMVRTDSRAQKLDAFLQPASKLAPTPTANPKGQSRGEPVTTNDMEEMD
NAEILEEQAPGATEDGEGTSRNTPADLPRKRPRAGQDKEQEDLTAAATTRRRAIKLSSVK
ELRDDIAEHAHKGLQEMLQNHSFVGCVNPQWTLIQHHTKLYLLNTTKLSQELFYQMLIYD
FGNFGILRLSEPAPLYDLAMLALDSEESGWSEEDGPKEGLAQYIVDFLKKKSEMLEDYFS
MEIDQEGNLTGLPLLLDKYTPPMEGLPMFILRLATEVNWDNEKDCFRDFSKECSQFYSIR
KQYVLELEPGEEEQDAELNSWRWKVEHLLFKSFRSLFSPPKHFSEDGSVLQIANLPDLYK
VFERC
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgtccggggtgattcggagactcgatgagaccgttgttaatcggattgctgctggagaa
gttatccaacgtcctgcaaatgctatcaaagaattgcttgaaaactgtttagatgccaag
tccaccaacatacaggtgactgtgaaggaggggggtctgaaacttatccagatacaagac
aatggcactggcatcaggaaagaagatatggaaatagtatgtgaacggtttacaacaagc
aagctccagacttttgaggacctcaacgccatctcaacctatggtttccgaggagaggca
cttgccagtataagccatgttgcccatgtgaccataacaaccaaaacggctgacgccaag
tgtgcttacagagccacctactgcgatgggaaactaaagacccaacccaaaccctgcgct
ggaaaccaggggacacagatcactgcggaggatctgttttataacgtgtccaccagaagg
aaagcactaaagagccccagtgaggagtactccaggattgtggaggtggtgagcaggtat
gccatacacaactctgggaaaagctttgctgtcaaaaagcaaggcgagaccatggcagac
gtcaggaccctacccaacgcctccatactggataatatccgtgtggtgttcggcaataca
gtcagcagggagctgattgaagtgggctgtgaggatcagaagcttgcctataagctgaag
ggccacatctccaacgccaactactcagtgaagaagtgcatcctcatcctcttcatcaat
catcgtctggttgaatcgagtgccttaaaaaaagccattgagaccgtttatgctgcatac
cttcccaagaactctcacccatttctatatctcagcctggagattgcccctcataacatc
gacgtgaatgtccaccctaccaaacacgaggtgcacttcctccacgaagactgtatcgtc
gagagcgttcaaagacacatagagagcaaactcctgggctccaactcctcacgcacgtac
ttcacacagactttgctgcctgggctgtctgtctccaccagcgaggggaagtcttcctcc
aactccacaggggacagtgagcgggtctacgcccatcagatggtcaggaccgacagtaga
gcccaaaagctggacgcctttctccagccggcgtccaagctggcccctactcccacagcc
aaccctaaagggcagagcaggggggaacctgtgaccaccaatgacatggaagagatggac
aatgcagagatcctggaggaacaggcgccaggtgccacagaggatggggagggaaccagc
cgaaataccccagctgatctccccaggaagcgtccccgtgccggtcaggacaaggagcag
gaggacctgactgctgcagccacaaccaggagacgagccatcaagctgagcagtgtgaag
gagctgagagatgacatcgctgagcacgcacacaaaggtcttcaagagatgcttcagaat
cactcgtttgtgggctgtgtcaacccccagtggactctgatccagcaccataccaaactg
taccttctcaacaccaccaaactcagccaggagctattctaccaaatgttgatctacgac
ttcggtaactttggcatcttgaggttatctgagcctgcgccactctatgacctggccatg
ctggctctggactccgaggagagcggctggtcggaggaggacgggcccaaggagggtctg
gcccaatacatagtcgacttcttgaagaagaaatctgagatgctggaggactacttctcc
atggagatcgaccaggaaggaaatctcaccggtttgccattgctgcttgacaagtacacc
cctcctatggagggtctgcccatgttcatcctacgtttggctactgaggtgaactgggac
aatgagaaggactgcttcagagacttcagcaaggagtgcagccagttctactctatcagg
aaacagtatgtcctggagctggagccgggagaggaggagcaggatgcagagctgaactcg
tggcgttggaaggtggagcatctcctgtttaaatccttccggagcctcttcagtccccct
aaacacttcagtgaggatggcagcgtactccagattgctaatctaccagacctctacaaa
gtatttgagcgatgctaa
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