Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139409440
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Entry
139409440 CDS
T10872
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase CYLD isoform X1
KO
K08601
ubiquitin carboxyl-terminal hydrolase CYLD [EC:
3.4.19.12
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04217
Necroptosis
ocla04622
RIG-I-like receptor signaling pathway
ocla04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
139409440
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
139409440
04625 C-type lectin receptor signaling pathway
139409440
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ocla01002
]
139409440
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139409440
Enzymes [BR:
ocla01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
139409440
Peptidases and inhibitors [BR:
ocla01002
]
Cysteine peptidases
Family C67
139409440
Ubiquitin system [BR:
ocla04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
139409440
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAP_GLY
SH3_CYLD
UCH
Motif
Other DBs
NCBI-GeneID:
139409440
NCBI-ProteinID:
XP_071010696
LinkDB
All DBs
Position
5:80977210..81020649
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AA seq
774 aa
AA seq
DB search
MDFLWSMDTCDVKMYYIIIEKQMLLINAGHICYIQESRYMSRLSRSECLQELPVICMGSR
YDRLLKVNHLKPVTAKEAELLQALGEDSERLKWYLERDALATALGLTKDTPVTVELDGKW
LQGIVRYIGRLTEPKFTDPIVGTFFGIELQGEDKGKGPTDGTYLSKTLFSCKKDCGIFAP
FSRVKPMFSKPKLVSKCLTFPAAQLATQPSSQQAHHQPLSTGDRVTFFMDEDILHGMVMD
LEEKEGRTLVIISTDRDEKITLPLDSVIKGDLLQQEPEPMETDKAVMSMEEVHPLGLGVD
SLVEVTLGIGPGYGTIRWIGNLPGQIGTYAGLELEDGYTGVSNGTFKDHRFFRCLPRQGL
FVKLLSCRPDSRFQGASANVLQERQALRSPGALPSSPIASDQVERMLIGRMKGIQGHINS
CYMDSALFSLFSCSSVLDSLLFKSTEPRDAPIQSTLLHDIVNPLRSEGFVEGRHIMKLRQ
QLQELGYCHTFTTEEKDPEEFLTLIMNHIFCLDPLLKLSAGGKVQDSYCYQIFLDNNHSL
VLPTVQHLLEHSFHSAGLKLAEVPSCLILQMPRFGKKFKMFQKIIPSLELDITDLLSEGP
QQCVLCGQLAYEECVDCFRDPVFSRTGFKVFCRTCSSQVHSHPERLSHSPSPLQLPEGYP
APTTLRAPPPAPPRERLELFAVLCIETSHYVSFIKHGPNSTDWIFFDSMADRHGERDGFN
IPQVEACPEVGMYLVMSPAELANQVPRDMKGVAKRLFCDAYMYLYQSTSISLYR
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atggactttctgtggtccatggacacatgtgatgtgaagatgtactacatcatcatagag
aaacaaatgttgctcatcaatgctggccacatctgttacatccaggagagcaggtacatg
tcaaggcttagcagatctgaatgtctgcaggaattgcctgtcatttgtatgggctccaga
tatgacaggttgctgaaggtaaaccacctaaaaccagtgactgctaaggaggcagagctg
ctgcaagccctaggagaggactcagagagactgaagtggtatttagagagggatgctttg
gctacagccctgggtttaactaaggatacacctgtcactgtggagttggatgggaagtgg
ctgcagggaattgtacggtacattggaaggttgacagagccaaagttcacagaccccatc
gtaggaaccttctttggcatcgaactacagggagaagacaaaggaaagggaccaacagat
gggacatatctgtcaaaaaccctattctcctgcaagaaagactgtgggatttttgctcca
ttttccagagtgaaacccatgttttccaaacccaaattggtgtccaagtgtctgaccttt
ccagcagcccagctggccacgcaaccgtcgtcccaacaggcccaccatcagcccctctcc
accggagacagagtcaccttcttcatggacgaggacatcctccatgggatggtgatggat
ctggaggagaaggagggcaggaccttagtcatcatctctactgaccgggatgagaagatc
accctaccgctggacagcgtcatcaaaggggacctgcttcaacaggagcctgagcctatg
gagactgataaggccgttatgtctatggaggaggttcaccccttggggcttggtgttgac
tctctagtggaggtgactctgggtataggacctggctatggaaccatccgctggataggc
aatttgcctgggcagataggaacctacgctggactggagctggaggatgggtacactggg
gttagtaatggtacctttaaagaccatcggttcttcagatgtcttcctagacaaggtctc
ttcgtcaagcttctatcctgccggcctgactcccgcttccagggggcatcagccaatgtc
cttcaagagagacaggcgttgcgcagccctggggcgctcccctcctcccccatcgcctct
gaccaggtcgagaggatgctgattggtcgaatgaaggggatccaaggccatataaactct
tgctacatggactccgccctcttcagtctgttctcctgttcctcagtgttggactccctg
ctgtttaagtcaacagagcctagggatgcccccatccagagtaccctgctacatgacatc
gtcaacccgctccgcagtgaaggttttgtggaagggagacacattatgaagcttcgtcag
cagctgcaggagcttggatactgccacacattcaccacagaggagaaagatccagaagag
tttcttaccctcattatgaaccatattttctgtctggatcctctcctcaaactgtcagca
gggggaaaggtccaggacagttactgttatcaaatcttcctggataacaaccacagcctg
gttctgcctactgtccaacacctgctggaacactccttccacagcgcaggactcaaactg
gcagaggtgccgtcttgtctgatcctccagatgcctcgctttgggaagaagttcaagatg
tttcagaagattatcccttcactggagctggacattactgacctcctctctgaaggtccc
cagcagtgtgtgttgtgtggtcagctggcatatgaggagtgtgtggactgcttcagagac
ccagtcttcagcaggacaggatttaaagtgttctgcaggacctgctcctctcaggtgcac
tctcaccccgagcggctgtcccacagcccctcccccctgcagctccctgagggttacccc
gcccccactaccctccgagccccgccccctgccccacccagagagagactggagctgttt
gcagtgctgtgcatagagaccagtcactatgtctccttcatcaaacatggaccaaacagc
acagactggatcttctttgacagcatggctgacagacatggagagagggatggcttcaac
attccccaggtggaggcatgtccagaggttggcatgtacctggtcatgtcacccgccgag
ctggccaaccaggtgcctcgggacatgaagggcgtggctaagcgtctgttctgtgatgcc
tacatgtacctgtaccagagtaccagcatcagcctctaccgctga
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