Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139409474
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Entry
139409474 CDS
T10872
Name
(RefSeq) PDZ and LIM domain protein 1
KO
K23353
PDZ and LIM domain protein 1/2/3/4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139409474
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
139409474
Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
139409474
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DUF4749
PDZ
LIM
PDZ_6
PDZ_2
Ehrlichia_rpt
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
139409474
NCBI-ProteinID:
XP_071010770
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All DBs
Position
1:complement(60287755..60303222)
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AA seq
310 aa
AA seq
DB search
MPLRVVVQGPGPWGFRLVGGKDFEQPLTISRITPGSKAAQASLSVGDQILAIDGEPTESM
THLQAQNKIKGCLEEMILSVDRSETKIWSPLSSEDGKTNPYKMNLASEPQEVKPIGSAHN
RSALPFAGFGPKVVTNQYNNPAGLYSSENIKDFNTAVDDVKTIATAANEPSNIPTVADSE
VYKMLQENQEADEPPRQSASFKVLQEILESDPDKPSGFRSVKAPAAKMVSTVGNANKLPI
CDKCGSGIVGMVVKLRDKFRHPECYTCSICDVNLKQKGHFFVEDQIYCEKHARERVTPPE
GYDVVTVFPK
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgcctctacgggttgtcgtgcaaggtccaggaccttggggattccgtctagttggtggg
aaggattttgaacaacccttgactatctcgcggatcactcctggcagtaaggctgcccag
gccagtctgagtgtcggggatcagatcctggccatcgatggagagcccactgagagcatg
actcacctgcaggcacagaacaagatcaagggctgcttagaggaaatgatcctctccgtc
gacagatcagaaactaaaatctggtcaccgctctcttctgaggatggaaagaccaacccg
tacaagatgaatctcgcatctgagccgcaggaggtgaaacccataggttctgcccacaac
aggagcgccctgccattcgccgggtttggccccaaggtggtaaccaatcagtacaacaac
cctgccggtctctactcctccgagaacatcaaggactttaacacggctgtggatgacgtg
aaaaccattgccactgccgctaacgagcccagcaacatcccaacagtggcagactctgag
gtctacaaaatgctgcaggaaaaccaagaggctgatgagcctcctcgacagtccgcttcg
ttcaaggtgctgcaggagattctggagtcagatcctgataagccctctgggtttaggagt
gtgaaggcccccgccgccaaaatggtctcaacagtgggaaatgcaaacaagttaccaatc
tgtgacaaatgtggatcagggattgtagggatggttgtcaagttgcgggacaagtttcgt
caccccgagtgctacacctgctccatttgtgacgtcaacctgaaacagaagggacatttc
ttcgtggaggaccagatctactgcgagaaacacgcacgcgagcgagtgactccacccgaa
ggctatgacgtggtcacggtcttccccaagtag
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