Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139409544
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Entry
139409544 CDS
T10872
Name
(RefSeq) BLOC-2 complex member HPS3 isoform X1
KO
K20190
Hermansky-Pudlak syndrome 3 protein
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139409544
Membrane trafficking [BR:
ocla04131
]
Endosome - Lysosome transport
Others
BLOC-2 complex
139409544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HPS3_C
HPS3_N
Motif
Other DBs
NCBI-GeneID:
139409544
NCBI-ProteinID:
XP_071010949
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All DBs
Position
5:90309565..90347101
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AA seq
1076 aa
AA seq
DB search
MVHVYNCHPFASQQIVPTEQEPGLVCCGGGALFVVSAGGCKIEAFQLGEEGCPLICRFAT
MGTVQSILHSEIGDYLVTIEEKNNAPYLRAYTNWRYQAAEKTRVGVRLLGHFLRGSSMRG
APKEQMEIIEIPLFERPLCVACCGVTGDLLVGCPKSLVLFSLKRQALNDKLSILDFERCL
IIHLPGLSPQQVGMDVAICAGYIALQTELEVLVVKLERLPGAAFTQKSADKKPQDHSLVP
QDMITGAEQDNETEGRREGLAGHRDHDDFFIFPKHQELLGDRAKDCGVKISLEWTGMESE
ARGNLIITYILYRRFAPDFFQDCSVEETHLHSLQFHPVFTSNQEVCVEGGRGVEPTCLFC
FFSLPKTGYLYSVRGGVQMVSAYQYPEKAQQAVLTDLFLHIITKNALQCFSVRCAAVAAR
AEDPYIDTTMKACPPVTMELCALRIQLFIGLKALCHYRHHIVLLTTADVETREDTERTAR
RVIEYKDHKTLRGIFLAVGIEPSTTPALKRFLAHSFLNRKSPFTKPQNPSEMGHGWNLYV
VNTVPPLQLYNEMVEYSKTYEETNPLSHSRLHLLSEAHLLLRATLLDPRVGNPVERPQTT
GQNLAQALGYNTTHTADRQELQQAFQESCAQLGDCFSRFDKRDCHLALPYYKMSGLSLTE
VISRNRGLSNSLCGYGKGFLFFLKHSLYEETLELLTEETANEVLDIFGVAEPSQLPHVIA
SPSMARASPDCGLAHLERLESIGAPSVPLTLSKAALALRMADLQLYRQHMDRHTEMLQVY
GFIEEAKLLLHGRGDTVVPTLLARHLRDNQDGLLVAAMVALHENDKVKLDEADLFFQELC
GDVSGPQGGPQLLVDFWEALLMASSQEAVIQELLFRLTTVYIDRVTRRDGRGFKPLKSAD
DLINWCSHYGVLYPWVSILTPAHFNIIPEDLHKLQSLLCGPTLDVSSILPLLEQLPDEDN
AGLSVHVLCATKLGHYESSIERLLDRCPQAIIPYANHELQNNNMALWWQKLFPELCERTR
ATQGENTILLAALKETLVVVAMELNPLEFLDLLPDDGTVHFFLPHLLECSQRNLMM
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atggttcacgtatacaactgccaccccttcgcgtcccagcaaatcgtgccaaccgagcag
gaaccggggttagtgtgctgtggcgggggtgccctattcgtggtgtccgctggaggatgc
aagatcgaggcttttcaactgggagaagaggggtgtcctctcatctgccgcttcgccact
atggggacagtgcagagcatcctacacagtgagataggggactacctggtgaccatcgag
gagaagaacaacgccccctacctacgcgcctacaccaactggcgctaccaggcggctgag
aagacccgcgttggcgtgcgtctgctcggtcatttcctgcgcggctcgtccatgcgcggg
gctcccaaggagcagatggagatcattgagattccactgtttgagcgtccgctgtgtgtg
gcgtgctgtggggtgaccggagacctgctggtggggtgtcctaagagcctggtgctgttc
agtctaaagagacaggccctcaacgacaagctctccatcctggactttgagcgctgtctc
atcatccacctcccgggactgtcgccccaacaggtagggatggatgtggcgatctgtgca
gggtacattgccctgcagacagagctggaggtgctggtggtcaaactggagagacttcct
ggtgctgcttttacccagaagtcagctgacaagaagccccaggaccacagtctggtcccc
caagatatgatcactggagcagaacaggacaacgagacggaggggaggagagagggtctg
gctggtcaccgtgaccatgatgacttcttcattttccccaagcaccaagagctcctgggg
gacagggctaaggactgtggggtcaagatctccctggagtggacaggcatggagagtgag
gccaggggcaacctcatcatcacctatatcttatacaggcgttttgctccagacttcttc
caggactgtagtgttgaggagacccacctgcactccctgcagtttcacccagtgttcacc
agcaaccaggaagtatgtgtggaggggggtagaggggtggagccgacgtgtttgttctgt
ttcttctcgctgcccaagacgggctatttgtacagcgtgaggggcggggttcagatggtc
tcagcctatcagtatccagagaaggcccagcaggccgtcctcactgacctcttcctccac
atcatcacaaagaatgctctccagtgcttctcagtgaggtgtgcagcagtggcagccaga
gctgaggacccttacatcgataccaccatgaaggcctgtcctcccgtcaccatggagttg
tgtgctctgcgtattcagctgttcattggtctgaaggctctgtgtcactaccgacaccac
atcgtcctgctgaccactgcagatgtggagaccagggaggacacagagaggaccgcacgc
agagtcatagaatacaaagatcacaaaacccttagggggattttcctagcagtaggtata
gagccttccaccacgccggctctgaagcgttttctggcccactccttcctgaacaggaag
tcacccttcaccaagccccagaatcccagtgagatgggtcacggctggaacctgtacgtg
gtcaacaccgtcccccccctccagctctacaacgagatggtggagtacagtaagacgtat
gaggagaccaaccctctgtctcacagccgtctgcacctgctcagtgaagcccacctcctc
ctgagagccacgctcctggacccccgggttggaaaccctgtagaacgacctcagaccact
ggtcagaacctagcccaggccctgggatataatacaacccacaccgcagacagacaggag
ctgcagcaggccttccaggagagctgcgcccagttaggagactgcttcagcaggtttgat
aagcgggactgccacctggccctgccctactataagatgtcaggcctgtctctgacagag
gtgatctccaggaacaggggtctgtctaacagcctctgtggctacgggaagggctttctc
ttcttcctcaaacactccctctatgaggagaccctggagctgctcactgaggagacggcc
aacgaggtgctggatatcttcggtgtggccgagccgtcccagcttccacatgttatagcc
agtccttccatggccagagccagccctgactgtggcctggcccacctagagcggctggag
tccatcggagccccctccgtacccctcaccctgtccaaggctgccctggccctgcgcatg
gcagacctgcagctctacaggcaacacatggaccgacacacagagatgctgcaggtgtat
gggttcatcgaggaagccaagctgctgctgcacggcagaggggatacggtggtacctact
ctcttggctcgtcacctcagggacaaccaggacggcctgctggtggcagccatggtggcg
ctgcacgagaacgacaaggtcaaactggacgaggctgacctcttcttccaggagctgtgt
ggggatgtgtcagggccccagggaggccctcagctgctggttgacttctgggaagccttg
ctgatggcctcgtcacaggaagccgtcatccaggagctgctgttccgcctcaccactgtc
tacatcgatcgcgtcacacgccgagacggccgcggattcaaaccgctcaagagcgcagac
gacctgattaactggtgttcccactatggtgtgttgtatccctgggtcagcatcttgact
ccagctcacttcaacatcattccagaggacctccacaaactacagtccctgctgtgcggt
cccaccctggacgtgtcatccatcctgcccctgttggagcagctgcctgacgaggacaac
gccgggctcagtgtgcacgtgctctgtgccaccaagctgggtcactacgagagctccatc
gagaggttgctagaccgctgtcctcaggccatcatcccttatgctaatcatgagctgcag
aacaacaacatggctctgtggtggcagaagctgttccccgagctgtgtgagagaaccaga
gcaacacagggagagaacaccatcctgctggctgcactcaaagaaacgctggtggtggtt
gccatggagctgaaccccctggagttcctggacctgttgcctgacgacgggacggtccac
ttcttcctgcctcacctgctggagtgcagccagagaaacctcatgatgtga
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