Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139409548
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Entry
139409548 CDS
T10872
Name
(RefSeq) DNA excision repair protein ERCC-6 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
139409548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139409548
03400 DNA repair and recombination proteins [BR:
ocla03400
]
139409548
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
139409548
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
139409548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
Motif
Other DBs
NCBI-GeneID:
139409548
NCBI-ProteinID:
XP_071010963
LinkDB
All DBs
Position
1:58128518..58178618
Genome browser
AA seq
1491 aa
AA seq
DB search
MPVEDTENQVPLILSNPASAALTPGGMEEDGANRGTAGCSISITGTSQGDTEQPAMACPD
STGSGEGSSAIKKSGALLHIDRQLIQAVSASSGAAELQGLGVAVYDQDVLEQGVLQQVDQ
AIHEASQAAAKAEAEKEYQSVLDDVRSCMAALKHINKIIEQLTPYATSSKDINRKIESVR
RQKENKEKQLKKIRAKQRRLQAILGGEDTLKIEAELLLEDDVDEEPGPSTLGSMLMPAQE
TEWEELIRTGHMTPFGTRVPQKEEKKEPRKFMLSENSGFDAYLADQAKMAVDRKRPAPLK
QKKKTAVGKEGKKTKEAALPSYSVDKKLQKRMRKLQRTALKAHSKAPAKRVTSIPKPRTK
LQAGGDEMDSEGSEYLPSDELMDPEREEWEDRDEGWGEEDEVDYYELKPYRKKSEEKGGG
KKGKRRERDEEYYPDSSEEDKGTGKKGKEKMKKDDGDVEFYKQRIRRWRRLRLREREEKR
ERGEEESDQSDAEFDEGFKVPGFLWNKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKT
IQVIAFLAGLSYSKLRTRGSNYRYQGLGPTVIVCPATVMHQWVSEFHTWWPPFRVAVLHD
TGSFTQTKEKLISEMAACHGVLITSYSAVRIMQETLQRYDGWHYVILDEGHKIRNPHAGV
TTACKQFRTPHRFILSGSPMQNNLKELWSLFDFVFPGKLGTLPIFMEQFSVPITMGGYSN
ASPVQVQTAYKCACVLRDTINPYLLRRMKADVKANLSLPDKNEQVLFCRLTEAQREVYQG
YLDSKEVYQILNGDMQVFSGLIALRKMCNHPDLFSGGPKILKGIPEDQLTEEEHFGFWKR
SGKLMVVESLLRLWFKQQHRVLLFTQSRQMLGILEVFVRENGYTYVKMDGTTTIASRQPL
IARYNEDKSIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKEV
TVYRLLTAGTIEEKIYHRQIFKHFLTNRILKDPKQRRFFKSNDIYELFTLSNPDGTQGTE
TSAIFAGTGSDVQAPKKPVRPRSNHRHSVTNHNVSSTGGGAIPSPSPRTGDRTTPLRSNI
SFNKNNRLTDSEEADQGEADIPIGQSQTECDTQHSREEGSNAHILTDPDRDQNSILTHKH
RDSPVTSPNPHKHSHTNSVSPSTQKQRDKHSPHKHRESQGPGPSPYKHREKRKHCDSTVE
GPKNKHGNQKQAKVEGHRISYLVKKRSYKGQEEREEQPEKQDQRQSDDYVLAKLFKKSGI
HSVMQHDSIMEASNPDFVLVEAEANRVAKDALKALKVSRQHCRLPYNQPAPAPARKRFGQ
KKNPLLSAPPATVVPAQDKCKDAAIIKKTIARKPIPGGHFSGEGVEVGGSSSTTAPLSSS
TLLARMKARNHLSLPQREGDEGEEEEGGARIPSGPPAPPTEHDELLVELRNFVAFQGAVD
GQASTKEVLDHFTPRLTHTQTPVFRELLRNICNFHRAKGQEGTWRLKPDYR
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgccagtagaagatactgagaaccaggttcctcttatcctctccaacccggctagtgct
gctctcaccccgggaggaatggaggaggatggggccaacagaggaactgctggatgctca
atctccatcactgggaccagccagggggacactgagcagcctgcaatggcctgcccagat
agcactggatctggggagggcagcagtgccattaagaagtctggagccctgctacacatt
gaccgccagcttatccaggctgtgagtgccagctccggggctgcagagctacagggtctg
ggtgtcgctgtgtacgaccaggatgtgttggagcagggggtcttgcagcaggtggaccag
gccatacacgaagccagccaggctgcagccaaggccgaggcggagaaggagtaccagtct
gtactagacgatgtcaggtcatgtatggcagctctgaagcatattaataagataatagag
cagctgactccctatgctacttccagtaaagacattaacaggaagattgagtctgtcaga
cggcagaaagagaacaaggagaagcaattgaagaagatcagagcaaagcagaggagacta
caggccatcctggggggagaagacacactgaagatagaggctgagctactgctggaggac
gatgtggacgaagagcccggcccatctactctgggcagtatgctgatgccggcacaggag
acggagtgggaggagctaatccggacgggccacatgacaccgtttggaacgagggtccct
cagaaggaggagaagaaggaaccacgcaagttcatgctgtctgaaaactctggcttcgac
gcttacctggcggaccaagctaagatggcggtggacaggaagagacctgcacccctaaag
cagaagaagaagactgctgtgggcaaggaagggaaaaagactaaagaagcggctctcccc
tcctactctgtggataagaagctccagaagcgaatgcgtaagctgcagaggaccgctctg
aaggcccactctaaggccccggctaagagggtcacgtcgatccccaagcccaggacgaag
cttcaagctgggggagatgagatggacagcgaggggtctgagtacctccccagtgatgaa
ctgatggaccctgagagagaagagtgggaggaccgagatgagggctggggagaggaggat
gaggttgactactatgagttaaagccctacaggaagaagagtgaagaaaaaggggggggg
aagaaggggaaaaggagagagcgtgacgaggagtattaccccgacagctcagaggaagac
aagggtacagggaaaaagggaaaagagaagatgaagaaagacgacggagatgtggagttc
tacaaacagaggatacggcggtggaggcggctgcggctgagagagagggaggagaagaga
gagagaggagaggaggagagtgaccagagtgatgctgagtttgatgaaggattcaaagtg
cctggattcctctggaataaactcttcaagtaccagcagacaggtgtgaggtggctgtgg
gagctacactgccagcaggcagggggaatcttgggggatgagatgggtctgggtaaaacc
atccaagtcatcgcattcctggctggcctcagctacagcaaactacgcacacgagggtcc
aactacaggtaccaaggactaggtcctacagtgatagtgtgtccagcgacagtcatgcac
cagtgggtcagtgagtttcacacctggtggcccccattcagagtggctgtcctacacgac
acgggatccttcacccaaacaaaggagaagttgatatcagagatggcagcatgtcatggt
gtcttgataacgtcgtattcagccgtgaggatcatgcaggagaccctgcagagatacgac
ggctggcactacgttatactggacgagggacacaagatccgcaaccctcacgctggagtt
accaccgcctgcaaacagttccgtactcctcataggttcattctatctggcagtcctatg
cagaacaatctgaaggagctgtggagtctatttgactttgtcttccctggcaaactgggc
acgctgcctatttttatggaacagttctctgtaccgatcaccatggggggctacagcaac
gcttcacctgtacaggtccagacagcgtataagtgtgcgtgtgttctgagggataccatt
aacccttacctgctcagacggatgaaggctgacgtgaaggccaacctctctttacctgac
aagaatgaacaggttttgttttgcaggctaacagaggcgcagcgtgaggtgtatcagggc
tatctggactccaaagaggtctaccaaatactgaatggagatatgcaggtgttctcgggc
ctgatagcactgcgtaagatgtgcaaccacccggacctgttctctgggggtcccaagatc
ctgaagggtataccagaggaccaactgactgaagaggaacactttggcttctggaaacgt
tccggcaaactgatggtggtggaatcactgctccgactttggtttaaacagcaacacaga
gtcctgctgttcacacagtccagacagatgttggggatattggaggtgtttgtgagggag
aatggctacacctatgtgaaaatggatggtaccaccaccatcgcctccagacagcctctc
atcgctcgatacaacgaagacaagtctatctttgtgttcttgttgaccaccagagtgggg
gggctgggagtcaacctgaccggagccaaccgagtcatcatctatgaccctgactggaac
cctagcactgacacacaggctcgagagcgagcttggaggatcggtcagaaaaaggaggtg
actgtctatagactactgaccgccgggaccattgaggagaagatctaccacaggcaaatc
ttcaaacacttcctgaccaaccgtattctgaaggaccccaaacagcgacgcttcttcaag
tccaacgacatctacgaactgtttaccttatctaaccctgacgggacgcagggcactgag
accagtgctatatttgcaggcacgggttctgatgtccaagctcctaagaagccagtcaga
ccaaggtctaaccatagacactctgtaaccaatcacaatgttagctccactggaggtgga
gccatcccttccccatcgccccggactggagacaggaccaccccccttcgcagtaacatc
tctttcaataagaacaacaggctgacggacagcgaggaagccgaccagggcgaggcagat
attcctattggacagtcccagacagaatgtgacacacagcattctagggaggagggaagc
aatgctcatatactcacagatccagacagagaccaaaactccattctgacccacaaacac
agagactcacccgtgaccagcccaaacccacacaaacattcacacactaactccgtcagt
cccagcacacagaaacaacgagacaaacacagtccacacaaacacagagagtctcaagga
cccggccccagtccctacaaacaccgggagaagaggaagcactgtgactcgacagtagaa
ggacctaaaaacaaacacgggaatcagaaacaggccaaggtcgagggtcatcgcatctct
tacctggtgaagaagaggagctacaaaggacaagaggagcgcgaggagcagccggagaaa
caggaccagagacagagcgacgactatgtactggccaaactcttcaagaagtcgggtatc
cacagtgtgatgcagcatgactccatcatggaggcatctaacccagactttgtcctggtg
gaagctgaagctaacagagtagctaaagacgctttgaaagctctgaaggtctccagacaa
cactgtagactgccctacaaccaacctgccccagctccagccaggaagaggtttggtcag
aagaagaatcctttgctgtctgctcctcctgctacagttgtcccagctcaggacaaatgc
aaggacgctgccatcatcaagaaaaccatcgctaggaaacccatcccggggggtcacttc
agtggagaaggggtagaggtgggaggctcttcctctactacggcccccctctcttcctcc
actctactggcccgcatgaaagctaggaaccacctcagcctgccccagagagaaggggat
gaaggagaagaggaagaggggggtgcccgtatcccctcaggccctcctgccccccctacg
gaacacgatgaactcctggtggagctgagaaactttgtggcattccagggagctgtggat
ggacaggccagcaccaaggaggtcctggaccacttcacccccagactgacccacacccag
acccctgtcttcagagaactactccgaaacatctgtaacttccacagggcaaaggggcag
gaggggacgtggagacttaaacctgactacagataa
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