Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139409564
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Entry
139409564 CDS
T10872
Name
(RefSeq) prominin-1-A-like
KO
K06532
prominin 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139409564
04090 CD molecules [BR:
ocla04090
]
139409564
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
139409564
CD molecules [BR:
ocla04090
]
Proteins
139409564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Prominin
DUF2207_C
DUF885
MLKL_N
TctB
AgI_II_C2
Med9
Condensin2nSMC
Spectrin_5
WEMBL
Snapin_Pallidin
Motif
Other DBs
NCBI-GeneID:
139409564
NCBI-ProteinID:
XP_071011004
LinkDB
All DBs
Position
1:complement(58488796..58520800)
Genome browser
AA seq
830 aa
AA seq
DB search
MGAYRRVWRMGGCVGAVLAWIGALFLGSSLAQPPADSCPTGVTPLNLSQPQYQSVPGADT
GFMSGVVQSFLHTVQPNPFPKDLLVKLLEENGNKYNDDKTIKEVLLYEVGFLVCAAIGIV
YIILMPLVGFCLACCRCCGRCGGHMYQKQTKAVYCHRRGFYWATLLTTLVILSGNICMFF
SNQFLKGSVEDSSVELNNTLDNLQTYLTAVPQQIDSVLIGSNETVDEVTRSLNNIGNLLG
KEIQRRLEGPLKPSLQSVRDIANVVNSTSVLLVRLDSTLTQVRSDVSVVQANVSSVRDRI
NSTLRNPNCTACSAYQSELQKLTFATTIAVPSLSELQSAVNNVTEADLNSKVKEGEDFFA
SIPQKVTNDTKDVVQNVKQQLEDIKRQISEVKGNIPVSALRNISDTLGEAQRYIGMYSQQ
SERVEMIRWGVCIILSCSVLLVVVCNLLGLFLGPVGLSPKDEPTERSSTADCGGTFLMAG
AGLSFLFSWLFMLVVLVLFILGGNVYTLICQPWRSGQLLQFADTPGLIHGFNLGKTLGLK
SNLTLTEVYNDCEKNRPLWTTLHLYDLIDLNALLNVSKYTEEIQQHFNRNEIKLSTVTLL
TRDIRNQLHSFSDKAHDVDFSSVTQQINNISSIDLNETADRLDQLAAAQTGVKLELTREA
TDLREIQFYINTAIIPQLTHLNSTIDALGVIASHIDRTVGDVLREVGTAQDFLNTNTSQI
VKAESRGFLDCQMGYFTAYADWANFTITQQVGLCGPVAEAMDSAEVIVCSNMVQSLNAFW
FSLGWCTIFLVPSIVFSIKLAKFYRRMKHSDNYDNHIAMSIIPRAQVQPY
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgggagcatataggagagtttggaggatggggggctgcgtcggggcggtgttggcctgg
attggggcactgttcctgggttccagcttggcccagcctcccgctgactcctgtcctacg
ggagtcactcccttgaacctgagccagccccagtaccagtcagtcccaggagcagacaca
ggcttcatgtccggggtggtccagtccttcctccacaccgtccagcccaaccccttcccc
aaagatttgctggtgaaattattggaggaaaatggcaataaatacaatgatgacaagacc
attaaagaggtccttctctatgaagttggtttcctagtgtgtgctgctatagggatcgtg
tacattatcctgatgcccctggtggggttctgcctggcctgctgtcgctgctgtggacgc
tgtggaggacacatgtaccagaagcagactaaagctgtctactgtcacaggagaggattc
tactgggctacgttactcaccacgctagtcatactttcagggaacatctgcatgttcttc
agcaaccagtttctgaaagggagtgtcgaggacagctctgtagaactcaacaatacactt
gacaacctccaaacctacctcactgctgtcccacagcaaattgatagtgtgctgataggg
agcaatgagacagtggatgaagtcaccagaagcctcaataatataggtaatctgctgggc
aaggagatccagagaaggctagagggccccctgaaaccttccctgcagtctgtcagagat
atagccaatgtggtgaacagtaccagtgtcctgctggtgaggttagactctactctaacc
caggtccggtctgatgtatctgtggtccaggctaatgttagctctgtcagagaccgcatc
aacagcacactgagaaaccctaactgtactgcatgctcggcctatcagtcagagctacag
aaactaacatttgccaccactatcgctgtccccagtctgagtgagctgcagtcggccgtt
aataacgtcaccgaggctgatctaaactctaaagtaaaagagggagaagacttctttgcc
agtattccccaaaaagtgaccaacgacaccaaggacgtggtacagaatgtgaagcagcag
cttgaagacatcaagagacaaatctctgaggtgaagggaaacatccctgtctctgccctc
agaaacatctcagacacactgggagaggctcagagatacatcggcatgtactcacaacag
tcagagagggtagagatgatcaggtggggtgtgtgtattatcctgagctgttcagttctc
ctggttgtagtgtgtaacctcctgggtctgtttttgggcccggttggactaagcccaaag
gacgagccaacagaacgatccagcaccgcagactgtggaggaaccttcctcatggcgggt
gcagggctaagtttcctgttttcctggctcttcatgctggtggtgttagtactgtttata
ctgggaggaaatgtctacacactcatctgccagccctggcgcagtggacagctactacag
tttgctgacactccaggcctgatacatggcttcaatttaggaaagacactgggcctgaag
agcaacctgacactcactgaagtatacaatgattgtgaaaagaacaggcctctatggaca
acactccatctgtatgatctcatagacctcaatgctttgctcaacgtgtccaaatacaca
gaagagattcagcagcactttaacaggaatgagatcaaactgtcgaccgtcaccctgctc
acccgcgacatacgcaatcagctacacagcttctctgacaaggcccatgatgtcgacttc
agctctgtcacacagcagatcaacaatatttccagcattgatctgaatgaaacagcagac
aggctagaccaactggctgctgctcaaactggtgttaaattagagctgacacgggaggct
acagacctgagagagatccagttctacattaacactgccatcatcccacaactgactcat
ttgaactccaccatagacgccctcggtgtcatagcgtcacatatcgatcgcacagtcgga
gatgtgttgagggaagtgggaacagctcaagacttcctcaacactaacacttcacagatt
gtcaaggccgagagtagggggttcctagactgtcagatggggtacttcacggcgtatgct
gactgggctaatttcacgatcactcagcaggttggtctctgtggcccagtggctgaagct
atggactcagctgaggttatagtctgctcaaacatggtgcaatctctgaatgcattctgg
ttcagcctgggctggtgtacgatcttcctggtccccagcatcgtcttctccatcaaactg
gccaagttctacaggaggatgaagcacagtgataactacgacaaccacatagccatgagc
atcatcccccgagcccaagtccaaccctactga
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