Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139409572
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Entry
139409572 CDS
T10872
Name
(RefSeq) cysteine protease ATG4B isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04136
Autophagy - other
ocla04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
139409572
04136 Autophagy - other
139409572
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ocla01002
]
139409572
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139409572
03029 Mitochondrial biogenesis [BR:
ocla03029
]
139409572
Peptidases and inhibitors [BR:
ocla01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
139409572
Membrane trafficking [BR:
ocla04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
139409572
Mitochondrial biogenesis [BR:
ocla03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
139409572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Motif
Other DBs
NCBI-GeneID:
139409572
NCBI-ProteinID:
XP_071011033
LinkDB
All DBs
Position
5:92924136..92937830
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AA seq
400 aa
AA seq
DB search
MHFYISATLTYDTLGFGEFDDFPETSEPVWILGKEFNALTEKEDILSHVTSRLWFTYRKN
FPPIGGTGPTSDTGWGCMLRCGQMILGEALVRRHLGRDWRWVRSQSQREDYIGILNAFLD
KKDGYYSLHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDSWSRLAVHVAMDNTVVIE
EIKRLCMPWLDYGGAACVDLQGGMSERNGCLEGACALAEEETALWNPLLLLIPLRLGLSD
INEAYIETLKQCFQLPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPCEDSQV
PDDSYHCQHPPCRMHICEIDPSIAVGFFCRTEDDFDDWCMRFRKLSHTRAGLPMFELIDC
QPSHFACSVDVLNLNPDFSDSDRLERFFDSEDEEFEILSL
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgcacttttatatttcagctactctcacatacgacacccttggctttggagagtttgac
gattttccagagacctcagagccagtgtggatcttggggaaagaattcaatgcactcaca
gaaaaggaagacattctttcacatgtcacttcacgactatggttcacctacagaaaaaac
ttcccgcccattggagggacagggcctacgtccgacacaggctggggctgcatgctgcga
tgtggacagatgattctaggcgaggccctggtccgcaggcatctaggccgagactggaga
tgggtgaggagccagtctcagagagaagactacatcggtatcctcaacgccttccttgac
aagaaagacggctactattctttacatcaaatcgcccagatgggagtcggggaggggaag
tctataggccagtggtatggaccgaacacagtggcacaggtactgaagaaactagctgtg
tttgactcgtggagtcgcctggctgtacacgttgctatggacaacactgtggtgatcgaa
gagatcaagcggttgtgtatgccctggctggactatggtggagcagcgtgtgtggatctc
caggggggtatgtcagagcgtaacggctgcctggagggggcctgcgccctggctgaggaa
gagaccgctctctggaaccccctgctcctcctcattcctctcaggctgggcctaagcgat
atcaacgaggcctacatcgagaccctgaagcagtgcttccagctgccccagtccctgggt
gtcatcggagggaaacccaacagtgcccattactttataggctatgttggagaagagctg
atctacctggacccccacaccacccagcctgcagtagagccctgtgaggacagccaggtc
ccagacgacagttaccactgtcagcacccgccatgccgcatgcacatctgtgaaatagac
ccctccatcgcagtgggtttcttctgcagaacggaggacgactttgacgactggtgtatg
cgcttccgaaagttgtcccacactagagcaggcctgcccatgtttgaactgatagactgt
caaccatctcacttcgcctgttctgtagatgtactcaacctcaaccctgatttctcagac
tctgataggttggagcggttctttgattctgaggatgaagagtttgaaattctgtccctg
tga
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