Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139409763
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Entry
139409763 CDS
T10872
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
139409763
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocla03021
]
139409763
03036 Chromosome and associated proteins [BR:
ocla03036
]
139409763
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
139409763
Coactivators
SAGA/TFTC/STAGA complex
139409763
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
139409763
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
DUF3124
Motif
Other DBs
NCBI-GeneID:
139409763
NCBI-ProteinID:
XP_071011245
LinkDB
All DBs
Position
5:77857775..77869107
Genome browser
AA seq
732 aa
AA seq
DB search
MPTTENSANETPNQAEKSASPANSGSGTANISDTIVQVGATVKAQTPSASCPAIPPFISK
GKHSTGHVIHNHKVSCEQPASNGGHDNHGTETHFSNGCGTESELSNGDHERTATGAHELS
FGTSGDSSCHRDPGMVLIRSDSGQLMLVSQQALAAAQGLAARTPGTGTSPSPRPPTTQVS
AATVVRKAENPGVIRVPPPPSPHVTTAQSTPMVKVVGVAPTPPAGQIQIPRPMIRPVAPV
TVTRSPGPGPLIIPTKRTNTPRATPPTITPEVLENVKKCKNFLVTLIKLASSGTHSADMA
KNVRELVKSLLDGRLEPEEFTDQLYRELKSSPQPYLVPFLKKSLPAVRQLTPNPQLFIQE
VDQPKPQAPATSKAPASKAPAPTAGRTPTLLSTNSRPAHLSAASGQSIKSTQLVIQQPRG
VVYKPAVTNPAPARTYLSVQNRSLAKPMVIQSGQYYNTGAVVRRTPFLVPPSPAQRHAFK
DSVGSFREEDDINDVASMAGVNVSEENARILATNSGLVGSVERSCQDKPFLSPAPLLTHI
LHTGEKFGVSEVGSDVVSLVSHATQERLRDLLEKVTVVAQHRKIALKEDYSHVQTSDVRS
QLHFLEELERLEKQRRDDEERETLLRVARSRCNTDDPDQQLLKQRAKELQQLEQAQLQHR
EANLTALAAIGPRRKRPLDSNGNQVGPGGIMSVLQRAGVQRVSGVSLRDLLFCLEQDPPL
RHSLTLYKGLLR
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgccaaccaccgaaaactccgcaaatgaaactccaaatcaggcagagaaaagtgcctcc
ccggcaaacagtggcagtggaacagcgaatatctcggacactattgtgcaggtgggagcg
acagtcaaagcccagacaccttctgccagttgccctgcaataccccccttcatttcgaaa
ggcaagcactcaaccggtcacgtcatccacaaccataaagtcagttgtgagcaacctgcc
tccaacggtggtcatgataaccacgggactgagacccatttctccaatggttgcgggacc
gagagtgagctctccaacggtgaccatgagcgcacagccaccggtgcgcatgagctctcc
tttgggaccagcggtgactcgagttgccaccgcgacccaggcatggtgctcatccgtagt
gacagtggccaactgatgctggtgtcccaacaagctttggctgcagcccagggcctcgca
gccagaactcctggcactgggacctctcctagcccaaggccaccaaccacacaggtgtct
gcagcgactgtcgtgagaaaagctgagaatccaggtgtgatcagagtgcctcctcctcct
agcccccatgtgaccacagcacagagtacacccatggttaaggtcgtaggggttgctccg
acccctcctgcaggccagatccagatccccaggcctatgatccgcccagtggcccctgtc
acagtcacccgttctcctggccctggtcctctcatcatcccaaccaaacgcaccaacacc
cccagggccacaccccccaccatcacacctgaggtcctggagaatgtgaagaagtgtaag
aacttcctagtgacgctgatcaagctggcctctagtggaacccactctgctgacatggcc
aagaacgtccgagaactcgtcaagagcctgctggatgggagacttgaacctgaggagttc
actgaccaactctaccgtgagctcaagtcttctccccagccctacctggtaccctttctc
aagaaaagtctcccagctgtgcggcagctcacccccaacccacagctcttcatccaggag
gttgaccaaccgaagccacaggctccagccacctccaaggccccggcctccaaagccccg
gcccccactgcaggccgcacccctaccctcctctccaccaactctaggcctgcccacctc
agcgctgctagtggccagtcaatcaaatccacccagctagtgatccagcagcctagaggt
gtggtgtataagcctgctgtgacaaaccccgccccggcccgtacatacctgtctgttcag
aacaggagcctggccaaacctatggtcatacagtcaggacagtactacaacacaggtgct
gttgtcaggcggactcctttccttgtcccaccgtctccagcccagagacacgccttcaag
gacagtgttggttctttcagagaggaggatgacatcaacgatgtggcctccatggctggg
gtcaacgtgagtgaggagaatgcccgtatcctagcaaccaactctgggctcgtgggctct
gtggagcgatcctgtcaggacaaacccttcctgtccccagccccgctgctcacacacatc
ctccacactggtgagaagtttggagtgtccgaggtggggtcagacgtggtcagtctggtg
tctcacgccacacaggagcgtctcagagacctgctggagaaagtcacagtggtggcacag
catcgcaagattgccctcaaggaggactacagtcacgttcagaccagtgatgtgcgttcc
cagctccacttcctggaagagctggaacgtctggagaagcagaggagagacgacgaggag
agggagacactgctccgcgtcgccaggagtcgctgtaacaccgatgacccagaccagcaa
ctactgaaacaacgggccaaagagctccagcagttggagcaggctcagctgcagcacaga
gaagccaacctcactgccctggctgccatcggacctcgcaggaagagaccactggactcc
aatggaaaccaggtggggccaggtggcattatgtcagtactacagagggctggggttcag
agagtgtctggggtctctctgagggacctactcttctgtctggaacaggaccctcctcta
cgacactctctcactctctacaagggcctgctcagatag
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