Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139409827
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Entry
139409827 CDS
T10872
Name
(RefSeq) netrin receptor DCC-like
KO
K06765
deleted in colorectal carcinoma
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
139409827
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139409827
Cell adhesion molecules [BR:
ocla04515
]
Immunoglobulin superfamily
DCC/UNC5 family
139409827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Neogenin_C
fn3
I-set
Ig_3
ig
Ig_2
Pur_ac_phosph_N
FN3_DSCAM-DSCAML_C
Fn3_VIN3
Ig_Rha78A_N
V-set
Interfer-bind
fn3_SORL1
C2-set_2
C2-set_3
CRLF2-like_D2
Sp38
Protocadherin
EphA2_TM
GH101_dom-5
TM_ErbB1
CytochromB561_N
DUF4998
Herpes_UL74
Motif
Other DBs
NCBI-GeneID:
139409827
NCBI-ProteinID:
XP_071011315
LinkDB
All DBs
Position
5:3977680..4545567
Genome browser
AA seq
1475 aa
AA seq
DB search
MEGSFGCFWVKRLSVFVWLCYLTGDSPSYGNTTSSSSSSSSQVFVDFSFVLEPQDTVTLR
GGVLQLDCEAQSDQGIPIIVWKKDGVLLSAVVDERRQQFPNGSLVVQNVVHSRHHRPDEG
LYQCLARLDGVGAIVSRTAQVTVSGPLKLVVPTESVSSYLGDTALLRCEVTGDPMPVVRW
QKNREDLPLTLTPESRVVVLPSGSLQVSKVQPPDSATYRCLADNPGSARTGSDADLRVLP
EPGTTRGLLFLQKPQRVTSLLGRDAVLECSASGFPTPAFHWMRGAERIQSRSKKYSLLGG
SNLLISSVTDDDSGSYSCVAFNKNQNITASCELSVLVPPQFLNYPTNTYSYESTDMELEC
AVTGNPPPTVRWMKNGEEVIPSDYFQIVDGSNLQILGLVKSDEGFYQCVAENEAGNAQAM
AQLILREPVVPSSGVLLPSAPRDVVPVLVSSRFVRLSWRPPQETRGTVQTYGIYYSQDTV
NRERSVNVSEPETLQMTVSNLKPEETYSFRVVAYNDNGPGERSETLKLTTQPELHVPGPV
ENLQVESISPTSIQASWDVPTYANGPLLGYRLLWTETPSGKEQSVEVNGQSYKMEGLKKF
TEYSLRVLALNRYGPGVTTEDMSITTLSDVPSAPPQNISLEVVLSRSIKVSWQPPPPNSQ
NGFITGYKLRHRKTGRRGDQEAIEPNNFWYLFTGLEKGSQYSFQVSAMTANGTGPASEWF
TAETPENDLDESQVPNQPSSLHVRPLPNSIIMSWTPPLNPNILVRGYIIGYGVGSPYAET
VRVDSKQRYYAIENLEPSSHYVISLKAFNNAGEGVPLYESAVTRSITDPIDPSDDDLFHL
FDKYPTPIPDTSTPMIPPVGVQAVALTPDSVRVSWADNSMTKNQKTTEVRYYSVKWKTSY
STSGKFKSADTTALSHSVTGLKPNTMYEFAVMVTKGRKSSTWSMTAHATTYEAAPSSAPK
DLTVISREGRPRAILISWQPPMETNGRIMGYILYYTLDKNMPIDDWVMESISGDRLTHQV
MDLNLDTVYYFRIQAKNAKGVGPLSDPIHFRTNKVEHPDKMANDQGRHGDGGYWPSDNNL
IDRSSLNDIGQMRPPHGSVTPQKNSNLLVIIVVSVGAVTVVVVVIVALICTRRSSAQQRK
KRATHSTGKRKGSQKDLRPPDLWIHHEEMELKNMEKPASAAPSGRDSPIQGSIQDIRSQS
VSHSQSESQMGSKSSHSGGDNDEASSCISTLERSLADRRATRTKLLIPMDSQPSNTTVVS
AIPVPTLEGSQYPGILSSPTCGYSHGTLTTHPKFTLRPMPFPSLTVDRSYTAAISTEGSS
TLGVQQTLISSSSSKPGVGGKGDLSLPGTEEVGGTSTRTIPTACVRPTHPLRSFANPLQP
PPMGTIDPKVYTPMMPHSSASLPKPTVKTASLGQAGKARSPLLPVSVPTAPEMGEEGQKQ
TDDSANVYEQDDLSEQMASLEGLMKQLNAITGSAF
NT seq
4428 nt
NT seq
+upstream
nt +downstream
nt
atggagggatcatttggatgtttttgggtgaaaagactttcggtatttgtctggttatgc
tatctcaccggtgattcaccatcatatggtaacaccacctcaagttcttcctcctcatcg
tcccaggtgttcgtggacttcagtttcgttctggaaccccaggacacggtgacattacgg
ggcggtgttcttcagctggactgtgaggctcagtcagaccagggtattccaatcatcgtc
tggaagaaggacggggtgttgctcagtgccgtggtggacgagaggagacagcagttccct
aacgggtctctagtggtccagaacgtggttcattcacgacaccaccgacctgacgagggg
ctctaccagtgtctggccaggctggatggggtgggggccatcgtcagcagaacggctcaa
gtgactgtttctggtccgttgaagcttgtggtccctacagagtcagtgtcctcctacctg
ggtgacacggccctgctgcgctgtgaggtgactggtgatcccatgcccgtggtacgctgg
cagaagaacagagaggacctgccactcaccttaaccccagagagcagagtggtggtactg
ccctccggatcgctccaggttagcaaagtccagccaccagactctgccacctaccgctgc
ctggcagacaaccctggcagcgcccgcaccggcagcgacgcagacctacgtgtgttgcca
gaacccggaaccaccaggggccttctgtttctccagaagccccagagagtcacctccctc
ctggggagagatgccgtgttggagtgctccgcctctgggttccccacccccgccttccac
tggatgagaggagccgagaggatacagagcaggtctaagaagtactccctgctgggcggc
agtaacctcctgatcagcagcgtaacggacgacgactcaggctcctacagctgcgtggcg
tttaacaagaaccagaacatcacggcttcctgcgagctgtccgtcctcgtgccaccccag
ttcctaaactaccccaccaacacgtattcctatgagagtacggacatggagctggagtgt
gctgtaacggggaaccctcctcccacggtgcgttggatgaagaacggagaggaggtcatc
cccagtgactacttccagatcgttgatggcagtaacctccagatccttggtctggtgaag
tcagatgaaggtttctatcagtgtgtggctgagaacgaagcagggaacgcccaggctatg
gcccagctcatactgagagagccagttgtccccagctcaggtgtcctcctcccctctgct
ccccgtgacgtggtccctgtcctagtttccagccgttttgtccgcctcagctggcgcccc
ccgcaggagaccagaggaactgtccagacttacggcatctactactcccaggacacggtc
aacagggagaggtctgtgaacgtgtcggagccagagaccctccagatgactgtcagtaac
ctgaagccagaggagacctactccttcagagtggtggcctacaacgacaacggccctggg
gagagatccgagacactcaaactcaccacgcagcctgagttgcatgtccccgggccagtg
gagaacctccaggtagagtccatctctcccacctccatccaggcctcctgggacgtcccg
acctacgccaacgggcccctgctggggtacagactgctctggaccgagacaccctctggg
aaggaacagagtgtggaggtgaacgggcagagttataagatggaggggctgaagaagttc
acagagtactcgttgcgtgtcttggcattgaaccgctatggccctggggtcaccacagag
gacatgagcatcaccacgctgtctgatgtgccaagtgctccaccacaaaacatctccttg
gaagtcgtcctctccagaagcattaaggtgagctggcagccccctcctcccaacagccag
aatgggttcatcaccggctacaagctccgacaccggaagaccggccgacgaggagaccag
gaggccatcgaacctaacaacttctggtacctgttcacagggctggaaaaaggcagtcag
tacagtttccaggtctctgccatgacagctaacggcacgggcccggccagcgagtggttc
accgccgagacgccagagaatgaccttgacgagagccaagtcccgaaccagccgagttcc
ctccatgttcgacccctgcccaacagcatcatcatgagctggactcctcccctaaacccc
aacatcctagtacggggctacatcattggctacggagtaggaagtccctacgctgagacg
gtcagggtggacagtaagcagcgatactacgccatagaaaacctggagcccagttcccac
tatgtcatctccctgaaagccttcaacaatgcaggagaaggggtccccctgtacgagagc
gctgtgaccagatctataacagaccccattgatccgtcagacgacgatctgttccatctg
tttgataaatatcctactcccataccagatacatccacccccatgatccccccagtaggt
gtccaggccgtggccctgaccccagactctgtcagggtcagctgggcagacaactccatg
accaagaaccagaagaccactgaggttcgctactactccgtcaagtggaagaccagctac
tctactagcgggaagttcaagtctgcagacacaacagccctcagccactccgtcactggc
ctaaagccaaacaccatgtacgagttcgctgtcatggttaccaagggccgcaagtctagc
acgtggagtatgaccgctcatgccaccacttacgaagcagctcccagctccgcccccaag
gacctgacggtaatcagtcgtgaggggagacccagagctattctgattagctggcaaccc
ccaatggagactaacggacggatcatgggctatatcctgtactacaccctggataagaac
atgcctattgatgactgggtaatggagagtatcagtggagaccgtctgacccaccaggtg
atggacctgaacctggacacagtctactacttcaggatccaggctaagaatgccaaggga
gtgggtcccctgtcagaccccatccacttcaggactaacaaagtggaacatccagacaag
atggccaacgatcaaggtcgccatggagatggtggctactggccttctgacaacaacctg
attgataggagcagtttgaacgacattggtcagatgcgtcctcctcacggcagcgtgact
ccccagaagaacagcaaccttctggtcatcatcgtggtctctgtgggtgccgttaccgtg
gtagtggttgtcatagtagcgctgatctgcacccggcgctcctccgcacaacagagaaag
aagcgtgccacccacagtacagggaagagaaaaggtagtcagaaggacctgagacctcca
gacctgtggatccatcatgaggagatggaactgaagaacatggagaagcctgccagcgcc
gccccctccggacgcgattcgcccatccagggttctatccaggatatcaggtctcagtct
gtcagtcacagccaatcagagagccagatgggcagtaagagcagccactcaggtggagac
aacgatgaggcttccagctgcatctcaacgttagagcgctctctagctgacaggagggcg
acacgtaccaagctgttgatccccatggactctcagcctagcaacaccactgttgtcagt
gccatcccagtgccaaccctggagggtagccagtaccctggcattctgtcctcgcccacc
tgcgggtacagccatggtactttgaccactcaccccaagttcaccctgagaccgatgccc
ttccccagcctcaccgtggaccgcagctacacagcagcgatatcgacagagggcagctcc
acgctgggggtacagcagaccttgatcagcagcagtagcagtaagccaggtgtaggaggt
aaaggggacctttctctccctggcacagaggaggtcggaggtacctcgacccgtaccatc
cccaccgcctgcgtcaggcccacgcaccccctacgaagcttcgccaaccccctccagcct
ccacccatgggcaccatcgaccccaaggtctacacacccatgatgccacattcaagtgcc
agccttcccaagccaacagtaaaaacagcatctctggggcaagctggcaaggccagatca
ccactactaccggtctccgtgccaacagcccccgagatgggtgaagagggacagaaacag
acagatgactcagccaatgtttacgaacaagacgacttgagtgaacagatggcaagccta
gagggacttatgaagcaactcaacgccatcactggctcggccttttaa
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