KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139409915
Entry
139409915         CDS       T10872                                 
Name
(RefSeq) small nuclear ribonucleoprotein Sm D3-like
  KO
K11088  small nuclear ribonucleoprotein D3
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    139409915
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ocla03019]
    139409915
   03041 Spliceosome [BR:ocla03041]
    139409915
   03032 DNA replication proteins [BR:ocla03032]
    139409915
Messenger RNA biogenesis [BR:ocla03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     139409915
Spliceosome [BR:ocla03041]
 Complex A
  U1 snRNP components
   Sm proteins
    139409915
  U2 snRNP components
    139409915
 Complex B
  U1 snRNP components
    139409915
  U4/U6.U5 tri-snRNP components
    139409915
 Complex C
  U2 snRNP components
    139409915
DNA replication proteins [BR:ocla03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     139409915
SSDB
Motif
Pfam: LSM ATP-grasp_2 Kringle TSP9
Other DBs
NCBI-GeneID: 139409915
NCBI-ProteinID: XP_071011429
LinkDB
Position
5:complement(25802955..25805200)
AA seq 128 aa
MSIGVPIKILHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTHRDGRVAQLEQ
VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGTGAGRGKAAILKAQVAARGRGRGGGIGR
GTIFQKRR
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtccatcggcgtgcccatcaagatcctgcatgaagcagagggtcacattgtgacctgt
gagaccaacactggtgaagtgtacagaggcaagctcattgaggctgaggacaacatgaac
tgccagatgtccaatatcactgtgactcatcgggatggccgtgtagcccaactagagcag
gtctacatccggggcagcaagattcgcttcctgattttaccggacatgttaaagaatgct
cctatgttaaagagcatgaaaaacaagaaccagggcaccggagcaggaagggggaaggca
gccattctcaaagcccaggtggctgcaagaggacggggtcgtggtggaggaattggaaga
ggaaccattttccagaagaggcgatag

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