Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139409923
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Entry
139409923 CDS
T10872
Name
(RefSeq) neurofilament medium polypeptide-like
KO
K04573
neurofilament medium polypeptide (neurofilament 3)
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ocla04812
]
139409923
Cytoskeleton proteins [BR:
ocla04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type IV
139409923
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Filament
Filament_head
DUF1664
Motif
Other DBs
NCBI-GeneID:
139409923
NCBI-ProteinID:
XP_071011436
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All DBs
Position
5:complement(27381399..27386775)
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AA seq
1089 aa
AA seq
DB search
MSYHPVDTIGSPFRRSMDSRTTYGRSTGTPSSGFRSQSWSRASPGSTMTSSYKRSVNVPV
ARAYSSTLLSSADSVDFNQTNGDYKRSNEKEQLQGLNDRFAGYIDKVHYLEQQNSQIEEE
IQTLRQKQVSQSQLGDLYDQELQELRSMLEQIHHDKAQIQLDTDHVEDDIQRIRDRFDEE
ARIRDETEGIIRALKKDMTDSDLVKSELEKKVQSLHDEIAFIRNNHEEEVSDLFAQVQAS
QVTMERKDIQKTDITEALREIRTQLEGHSNQNLQQVEDWFMCRYSKLTDAAAQNKDAIKS
ARDEIADYRRQLQSKTVELESVRGTRESLERQLNDIEDRHSSDLSSLQETIHQLDNELKG
TKWEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETHFSTFPYRHTVTSSKKSKYEPP
KLKVQHKFVEEIIEETRVEDEKDEMDQALAEMAQEFSATLEAEATDEGEDEGEEGGEEAE
GEGGEGESEEVVASTEAQVSSSTPAEEEEEDKEGGDEEEEGEKEEEGEKGEEGEGEKGDD
TEGGDEGEGEGELEETVLCSKAPESKASPDKEKAGEKEGSGGEEETGEGEGEEEGDDQDE
DAGSDKGCKDGDDKDEEDEKKGKDEKEYKTDEKAAVAKTEAPKTEAPKSEAPKVEVQKSE
TSKPSKPDSLKAESPKAGSPKSESPKAGSPKHESPKAVTPKSESPKPAGSPKSESPKPAA
SPKSESPKPAGSPKSESPKPFGSPKSESPKPAGSPKSESPKLAGSPKSESPKPAGSPTSE
SPKPAGSPKSESPKPAGSPKSESPKPAGSPKSESPKPSGSPKSESPKPSGSPKSESPKPA
GSPKSESPKLAGSPKSESPKPAGSPTSEFPKSAGSPKSESPKPAGSPKSESPKPAGSPKS
ESPKPAGSPKSESPKPTVSPKSESPNLGSPEAESPKGEAPKPEAPMSEVPKAAEEKVDKK
SDSEEERKVEKKDAAMNGDVEKITPEDKDKNDEGGKEAEEKDVISNGVDESPTKDDPDQK
DDPKDQKVVITKTVETITTGEDGAKHVTKSVTVTETVKESEDVMQEKTVSSKKMEKHSSQ
SVKVVTETE
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgagttaccacccagtggacacgatagggagtccattcaggagaagtatggatagtagg
accacctacggccgctccactggcacaccctccagcgggttccgttctcagtcctggtcc
cgggcaagcccaggctccacgatgacctcctcctacaagaggagcgtcaatgtgccggta
gccagagcgtacagctccacactcctcagctccgccgacagcgttgatttcaatcaaacg
aacggagactacaagcgctccaacgagaaagagcagctccaggggctcaacgaccgcttc
gccggttacatcgacaaggtgcactacctggagcagcagaacagccagatcgaagaggag
atccagacgctgcggcagaagcaggtgtcacaatcccagctaggcgatttatacgaccag
gaactccaggagctgcgctccatgctggagcagattcaccacgataaagcgcagatccag
ctcgacacggaccacgtcgaggatgacatccagagaattagggaccgcttcgatgaggaa
gcccgcatcagggatgagacggaaggcatcatccgggcgttgaaaaaagatatgaccgac
tctgatttggtgaagtcagagttggagaagaaagttcagtcactgcatgacgagattgcc
tttatccgcaacaaccacgaagaagaggtgagcgacctgttcgcccaggtgcaggcgtcg
caggtgaccatggagaggaaagacatccagaagacggacatcaccgaggcgctccgggag
atccgcacccagctcgagggccactccaaccagaacctgcagcaggtggaggactggttc
atgtgccgctattccaagctcactgatgctgcggcacaaaacaaagatgcaatcaagtcc
gcccgtgatgagatagcagactaccgtcgccagcttcagtccaagaccgtggagttagag
tccgtccgtggaaccagggagtcactggagaggcagttgaatgacatcgaggaccgacac
agcagcgacttgtccagcctgcaggagaccatccaccagctggataatgagcttaagggc
acgaagtgggagatggcgcgtcatctgcgtgagtaccaggacctgctcaatgtcaagatg
gccctcgacattgagattgctgcatacaggaaactcctagaaggtgaagagacccacttt
agcactttcccctaccgccacaccgtcacctcctctaagaagtccaagtatgaacctccc
aaactgaaagtccagcataagtttgtagaggagatcatcgaggagaccagggtagaggat
gagaaggatgagatggaccaggccctggctgagatggcccaggagttttctgccactctg
gaggcagaggcaacagatgaaggagaggatgagggagaagagggaggagaagaagcagag
ggagaagggggagagggtgaatcagaagaggttgtagcctccactgaagcccaagttagc
tccagcacacctgctgaggaggaagaggaggacaaagaaggtggtgatgaagaggaagag
ggagaaaaagaagaagagggtgagaaaggagaagagggtgagggtgagaagggagatgat
acagaaggtggtgatgagggagaaggagagggggaattagaggagacagtcctgtgctct
aaagccccagaatcaaaggcctctcctgacaaagagaaggctggagagaaggagggaagc
ggtggagaagaggagacaggagagggagagggagaagaggagggtgatgatcaagatgaa
gatgcaggtagtgacaaaggatgcaaagatggagatgataaggatgaggaagatgagaag
aaaggaaaggatgagaaagaatacaaaacagatgagaaggcagctgtagccaagacagag
gctcccaaaacagaagcccccaagagtgaggccccaaaagttgaggtccagaaatctgag
acctcaaagccctccaagccagactccctaaaagctgaatccccaaaggctgggtccccc
aagtctgagtcaccaaaagctggatccccaaaacatgaatctcccaaagctgtaaccccc
aaatctgaatccccaaaacctgctggatcccccaaatctgaatccccaaaacctgctgca
tcccccaaatctgaatccccaaaacctgctggatcccccaaatctgaatccccaaaacct
tttggatcccctaaatctgaatcaccaaaacctgctggatcccctaaatctgaatcccca
aaacttgctggatcccctaaatctgaatccccaaaacctgctggatcccctacttctgaa
tccccaaaacctgctggctcccccaaatctgaatccccaaaacctgctggatcccccaaa
tctgaatccccaaaacctgctggatcccccaaatctgaatccccaaaaccttctggatcc
cccaaatctgaatccccaaaaccttctggatcccctaaatctgaatccccaaaacctgct
ggatcccctaaatctgaatccccaaaacttgctggatcccctaaatctgaatccccaaaa
cctgctggatcccctacttctgaattccccaaatctgctggatcccctaaatctgaatcc
ccaaaacctgctggatcccctaaatctgaatccccaaaacctgctggatcccctaaatct
gaatccccaaaacctgctggctccccaaaatcggaatccccaaaacctacagtatccccc
aaatctgaatcccccaatttaggatcccctgaggcagagtcccctaagggtgaggccccc
aaaccagaagctccaatgtcagaggtccccaaggctgcagaagagaaagtagacaaaaag
agtgattcagaggaagagaggaaggtagaaaagaaagacgcagccatgaacggagatgtg
gagaagattaccccagaggacaaggacaagaatgatgagggtgggaaagaggcagaggag
aaggatgttatctcaaatggagtggacgagagccccactaaagatgacccggaccagaaa
gatgatccaaaggaccagaaggtggtcatcaccaaaacggtggagaccatcaccactgga
gaggatggagccaagcatgtcaccaaatctgtcactgtcaccgagactgtgaaggagtct
gaggatgtgatgcaggagaagacagtttccagcaagaagatggagaaacactcttcccag
tccgtcaaggtggtgactgaaactgagtaa
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