Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139410014
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Entry
139410014 CDS
T10872
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
139410014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocla03021
]
139410014
Enzymes [BR:
ocla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
139410014
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
139410014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
DUF1186
Motif
Other DBs
NCBI-GeneID:
139410014
NCBI-ProteinID:
XP_071011538
LinkDB
All DBs
Position
1:61027021..61048885
Genome browser
AA seq
1134 aa
AA seq
DB search
MDFASKWSSLLTSPSLKHLTEAGYGIPKEKQHAAVQDLTKAHIESFDQAVSEGLCRAVQA
IRPLEFMFKNDRISLAFVEATIFKPVVGKGSICRDLRVFPAECRGRRCSYRGKLVADVSW
SVNGVPKGIIKQSLGQLPIMVKSRLCNLHGLPPKELIEHHEEAEEMGGYFIVNGNEKVIR
MLIMPRRNYPIAMSRPKWKNRGQGYTQYGVSMHCVKEEHTAINMNLHYLDNGTVMLNFIY
QKELFFLPLGFALKALVDFTDFQIYQELIKGREANSFYKSCVSEMLRLVMEEGCITRGKV
LNYLGERFRVKMNLPEWYTHEQCANYLLDQCICIHLRSDVEKFYLLCLMTRKLFTFAKQE
CMEENPDSLMCQEVLTPGRLYLMFLKEKMAAWMVSVKLSMDKRAHRLTGGVSSDNLVKMF
NMGSDVTHPFEYLLATGNLTSKTGLGMLQNTGLCVVADKLNFIRYLSHFRCVHRGAAFAK
MRTTSVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAHCEIIAPALPTTTLPALLCSLGVT
PVDGSPGRAYTDCYPVLLDGAMVGWVETDLAPFLADSLRRFKVLKEKKIPPWTEIVLVPQ
TSKASMYPGLYLFTTPCRMVRPVHNLALGQQELIGTFEQLYINVGISEDEIEPGVTTHQE
LFLHSMLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLHSFQDRSDNKLYRLQTPQSP
LVRPVMYDHYNMDNYPIGTNAIVAVISYTGYDMEDAMILNKSSWERGFAHGCVYKTELVD
LAQKMKGEDNLVFGVKPGDPKVMDKLDADGLPSIGTVLQHGDPFYSYINLNTGQTFVNFY
KSQESCVVDNIKVCSNDVGSGRFKRVCITVRVPRNPTIGDKFASRHGQKGILSRLWPAED
MPFTESGMTPDILFNPHGFPSRMTIGMLIESMAGKSGALHGLCHDATPFTFSEENSALEH
FGDMLRAAGYNHYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKV
TNQPVGGRNIQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAQVCVDCGSLLSPLL
EKPPPYWSATRHRKTVCLLCGKSDSIDTVSVPYVFRYFVAELAAMNIKIKLDVK
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggattttgcgagtaagtggagtagtttactgacaagtccaagccttaaacatttaaca
gaagcaggctacggcataccgaaggaaaaacaacatgccgctgttcaggacctaacgaag
gctcatattgagtcgtttgaccaagcagtttcagaaggactgtgtcgtgctgtacaggcc
atccgtcccttggagtttatgtttaaaaatgaccggatcagcctggcatttgtggaggcc
accatctttaaaccagtggtgggcaaaggaagcatctgccgggacctgagggtgttccca
gcagagtgcagagggagacgctgctcctaccgggggaagcttgtggcagatgtcagctgg
tctgtgaatggggttcccaaaggcatcatcaagcagtctctgggccagttgcccatcatg
gtgaagtctaggctgtgtaacctacatgggctccctcccaaagagctcattgagcaccat
gaggaggctgaggaaatgggtggttattttattgtgaatgggaacgagaaggttattcgc
atgctgatcatgccaaggaggaactaccctatcgctatgtcaaggccgaagtggaagaac
agaggccagggatacactcagtatggtgtctcaatgcactgtgtgaaggaggagcacacc
gctatcaatatgaacctgcattacctggacaatgggactgtgatgctcaacttcatatac
cagaaagagctcttcttcctccccctgggctttgcactaaaggctctagtggacttcaca
gacttccagatttaccaggagctgatcaaaggtcgtgaggcgaactctttctacaagagc
tgtgtgtctgagatgctgcgactcgtcatggaggagggctgcatcacccgcggcaaggtg
ctcaactacctgggcgagcgcttccgggtcaagatgaacctgccagagtggtacacccat
gaacagtgtgccaactacctgctagaccagtgcatctgtatccacctgaggtcggacgtg
gagaagttctacctgctgtgtctgatgacgcggaagctattcacgtttgccaagcaggag
tgcatggaggagaacccggacagtctgatgtgtcaggaggtgctcacgccaggacggctc
tacctaatgtttctcaaggagaaaatggctgcctggatggtgtctgtgaaactgtctatg
gacaagagggcccataggctgactggtggggtgagctctgataatctggtgaagatgttc
aacatgggctctgatgttactcatccctttgagtatctgctagccactgggaatctcact
tcaaagacgggtctgggcatgctccagaacacgggactgtgtgtggtggccgacaagctc
aacttcatccgctacctgtcccacttccgctgcgtgcacagaggggcagcctttgccaag
atgaggaccacctccgtacgtcgtctgctgcccgagtcctggggcttcctgtgccctgtg
cacacccccgacggagagccctgcggcctcatgaaccacatgacggcccactgtgaaatc
atagccccggccctgcccaccaccaccctccctgccctgctctgctccctcggtgtgact
cctgtggatggttctcctggcagggcctacactgactgctatcctgtgctcctggatggt
gccatggtgggttgggtagagactgatctggcccccttcctcgcagactccctccgcagg
ttcaaggtgttgaaggagaagaagatccctccctggactgagatagttctggttccccag
accagcaaggccagcatgtacccaggcctgtacctcttcaccaccccctgccgcatggtg
cggcctgttcacaacctggccctgggccagcaggaactgatcggcacctttgaacagctc
tacatcaacgtgggcatcagtgaggatgaaatcgagccgggtgtgaccacccaccaggag
ctcttcctccacagcatgctgagcgtggtggctaactttatcccttactcggaccacaac
cagagtcccaggaacatgtaccagtgccagatgggtaaacagaccatgggcttccccctc
cactcgttccaggaccgctcggacaacaagctgtaccgcctacagacccctcagagccct
ctggtcaggcctgtcatgtacgaccactacaacatggacaactaccccatcggcaccaac
gccattgtcgctgtgatctcctacactggctacgatatggaggacgccatgatcctgaac
aagtcctcatgggagaggggctttgctcatggctgtgtttacaagactgagctggtggac
ctggcacagaagatgaagggcgaggacaacctggtgtttggggtcaaacccggtgacccc
aaggtaatggacaaactggacgctgatgggctgccctccatcggcacagtgctacaacat
ggagaccccttctacagctacatcaacctcaacaccggacagacctttgtcaacttttac
aagagtcaagaaagctgtgtagttgacaacatcaaggtgtgcagcaatgacgtgggctcg
ggccgcttcaagcgcgtctgcatcaccgtgcgagtgccccgtaaccccaccatcggggac
aagttcgccagccgccacgggcagaagggtatcctgagccgcctgtggcctgccgaggac
atgcccttcacagagagcggcatgacccccgacattctgttcaaccctcacggcttcccc
tcccgcatgaccatcggcatgctcatcgagagcatggccggcaagtcgggcgccctccac
ggcctgtgccacgacgccactcccttcactttctccgaggagaactcggcactggagcat
tttggggatatgttgcgcgctgccggctacaaccactatggcaccgagcgcctctacagc
ggcctcagcggcctggagctagaagcggacatcttcatcggcgtggtctactaccagagg
ctgcgtcacatggtctccgacaagttccaggtgaggaccactggcgcgcgggacaaggtg
accaaccagccggtgggcggaaggaacatccaggggggcatccgcttcggggagatggag
cgtgacgccctgctggcccacgggacctccttcctgctccacgaccgcctcttcaactgc
tctgatcgctctgtggcacaggtgtgtgtggactgtggtagcctactgtcccctctactg
gagaaaccaccaccctactggtcggccacacgccaccgcaagactgtctgcctcctctgc
ggcaagagtgactccatcgatacggtgtctgtgccatacgtcttccgctactttgttgcc
gagctggcggcgatgaacatcaaaatcaaattggacgtgaagtga
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