Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139410036
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Entry
139410036 CDS
T10872
Name
(RefSeq) LIM/homeobox protein Lhx5
KO
K18493
LIM homeobox protein 5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139410036
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain LIM
139410036
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
Homeodomain
Homeobox_KN
Dna2_Rift
Motif
Other DBs
NCBI-GeneID:
139410036
NCBI-ProteinID:
XP_071011565
LinkDB
All DBs
Position
5:complement(41757153..41772316)
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AA seq
395 aa
AA seq
DB search
MMVHCAGCDRPILDRFLLNVLDRAWHAKCVQCCECHCNLTEKCFSRDGKLYCKIDFFRRF
GTKCAGCLQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKEDYL
SSGAIKEVNLNSVSSCTDRSLSPDLQDPIQDDTKETDNSMSSDKDMNNNENEEQNSGTKR
RGPRTTIKAKQLETLKAAFVATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ
LSALGARRHAFFRGPRRMRPLGGRLEDPDILGPGAYGYYTEYQGDYYGGGGNYDFFPHGP
PSSQAQSPAESPYIHGGAMEGSVSAHHPSDDQRFTDMISHADTPSPEPGLPSSLQPVPGE
VYGGGPSPPFSLASNSSYSAPMSHPGQEMGETTVW
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgatggtccactgcgcggggtgcgacaggcccatcctggaccggttcctgctcaacgtg
ttggaccgagcctggcacgccaagtgcgtccaatgctgcgagtgccactgtaacctgacg
gagaagtgcttctcgcgtgatgggaagctttattgtaaaatagactttttcaggaggttt
gggacgaagtgcgcgggctgcctccaaggcatctctcccagcgatcttgtgcgcaaggcg
cgcagcaaggtgttccatctcaactgcttcacgtgcatggtgtgcaacaagcagctgtcc
acgggcgaggagctctatgtcatcgacgaaaataagtttgtgtgcaaagaagactaccta
agctcaggggctatcaaggaagtcaatttgaattcagtgtcatcatgcacagacagaagt
ttatcgccggacctccaggacccgatacaggacgatacaaaagagacggacaattccatg
tcctcggataaggacatgaacaataacgagaatgaggagcagaattcgggcacgaagcgg
cgaggcccgcggaccaccatcaaagccaagcaactggagacgctgaaggctgccttcgtg
gccacgccgaaacccacacgacacattcgggaacagttggcccaggagacgggactcaac
atgcgggttatacaggtgtggttccagaaccgtcgatctaaggagagaaggatgaagcag
ttgagtgctttgggggcccggcggcatgccttcttcagagggccccggaggatgaggccc
ctgggaggacgactggaggacccagacatactggggcctggggcctatggatactacaca
gagtaccagggcgactactacggaggagggggaaactatgacttcttcccccacggccct
ccttcctctcaggctcagtctccagcagaatccccctatatccatggaggtgccatggag
ggctctgtgtcagcccaccacccctctgatgaccagaggttcacggacatgatctcccac
gcagacacccccagcccagagcccggcctgcccagctccctgcagcccgtccctggggag
gtgtatggaggggggcccagcccacccttctccctggctagtaactctagctacagcgcc
cccatgtcccaccccggacaggagatgggagagaccaccgtctggtag
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