Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139410082
Help
Entry
139410082 CDS
T10872
Name
(RefSeq) TATA-binding protein-associated factor 172-like
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocla03021
]
139410082
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
139410082
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
TPR_Trm732_C
Vac14_Fab1_bd
HEAT_2
TOR1L1_N
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
139410082
NCBI-ProteinID:
XP_071011624
LinkDB
All DBs
Position
1:complement(61583582..61658485)
Genome browser
AA seq
1856 aa
AA seq
DB search
MAVSRLDRLFILLDTGTTPVTRKAAAIQLGDVVKLHPHELNNLLSKVLTYLRSPNWDTRI
AAGQAVEAIVKNIPEWNPSPKPKEESCVDFSPEDSSSDRLSFYRFDISRLLKHGASLLGS
AGAEFEVQDDKSGEVDPKERLARQRKLLQRKLGLDMGAAIGMDTMELFNDEDLDTQYTCT
PSGPKAQGQGERGSEPCSSSGNHVPMQAAEIIDSEFRPGMSNRQKNKAKRMAKLVAKQRS
RDMDPNERSNDSFEGEPEEKHRKTSNIVIEQPATEHKVLIDNVPDNSSLLDETQEWPLES
FCDELCNDLFNPSWEIRHGAGTGLREILKSQGAGGGKLVGSTAEQMARHHQEWLEDVVIR
LLCVFALDRFGDFVSDEVVAPVRETCAQTLGVALRHMTDSGVAMTVDILLKLLTEDQWEV
RHGGLLGIKYGLAVRQDLISALLPRVLPAITQGLQDLDDDVRAVAAAALIPVVDGLVQLL
PNKVPFIVNSLWDALLELDDLTASTNSIMTLLSSLLAYPQVRQCSMQQSLTVLVPRVWPF
LRHTISSVRRAALETLFTLLSKADQSCALWLNQVLQDMLRHIFQSCILESNQEILDLIQK
VWIELLRQAPQQYVVAASCPWMGAWLCLMMQASHIPIDINMLLEVKSRCKEKAGGKPRQG
ALVQVKETVQEYIAGAETVTEDPVTRDYVVTRARLMAAKLLGALCRCICDPQLNSSSQDI
RPAESLGQLLLFHLNSKSALQRIVVALVLCEWAAVQKVVSAMVQPRLLAILSEQLYYDEI
AIPFTRMQNECKQLIALLADAQIDVRDRLNCSVFTIDQANELVTTIFAESTVGLDTKSKQ
FHPLDSKRQQAQSTVGETSVEWQQLHLRVHMFTACAVVNLQALPDKLNPVVRPLMEAAKR
EENTLVQGYAASFIAKLLQQCATRQPCPNSKIVKNLCSSICMDPLLTPSSACPVPPTQTA
KAGMSEKECMHHMVNKTKGIITLYRHQRAAFVITSKRGPTPKTSKTATTELPPGSTITTD
TDENKKPFLVQRRGAEFSLTTVARHFGQELTGSLPYLWEFVVGPLRAVVENNQGIDAKLQ
LERGDAAAQELVNSLQVLEVTAGAMAPELKPLLLEHLPHLFTCLQHPYTAVRHMAARCVG
VLSKIATMETMHLFLECVLPWLGCIEDGTKQEGAIEAMACVMEQLDVDIVPYIVLLVVPV
LGRMSDPSDSVRFMATQCFATLIRLLPLEAGIPDPPTMSDDLIRQKARERHFMEQLLDSR
KLENYKIPVPIKAELRKYQQDGVNWLSFLNKYKLHGILCDDMGLGKTLQSICILAGDHYL
RAQEYAKTKAADCTPLPSLVVCPPTLTGHWVDEVGKFCTDEYLNPLHYTGPPTERARLQH
QVKKHNLVVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAIKQLAANFRVIL
SGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAMEA
LHRQVLPFLLRRMKKDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVSVEDTISTA
SIHEEEKPKLKATGHVFQALQYLRKLCNHPGLVLLPQHPEYKRITDQLAAQHSSLRDIQH
SPKLSALKQLLLDCGLGSSGSAEGTEAVVAPHRVLIFCQLKSMLDIVEHDLLKPQLPTVT
YLRLDGSVPTGLRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRD
LQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMSIANTVISQENASLQSMGTDQ
LLNLFTLDKEGKDDKGESSSGGKASIKNVLDGLGDLWDQQQYETEYNLDSFMHSLH
NT seq
5571 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgtcaaggcttgatcgtctgttcatcctgcttgacactggaactacaccggtg
acgaggaaggctgctgccatacagctgggagatgtggtcaaactccacccgcatgagctc
aacaaccttttgtcgaaggtgttgacatacctgagaagtcccaactgggacactcgtatc
gctgcaggtcaggcagtggaggccattgtgaagaatatcccagagtggaacccgtcaccc
aagcccaaagaagagtcgtgtgtagacttctccccagaagactcctcctctgaccggttg
agtttctaccgctttgacatttcccgcctgctcaaacatggtgcttctctgctgggttcc
gccggtgcagagtttgaggtccaggatgacaagtctggtgaggtggaccctaaagagcgt
ctggcccgccagaggaagctgctgcagaggaagctgggactggacatgggtgccgccatc
ggcatggacacgatggagctgttcaacgacgaggacctggacacccagtacacctgcacg
ccgagtggccctaaggcccagggacagggagagaggggctctgaaccctgctccagctcc
ggcaatcacgtgcccatgcaggcggcagagataatagactcagagtttcgaccaggcatg
agcaaccgacagaagaacaaggctaagaggatggccaagctagtggcaaagcaacgatcc
agagacatggatcccaacgagagaagtaatgacagttttgagggggagcctgaggagaag
cacaggaaaactagtaacatagtcatcgagcaaccggcaacggagcataaagtcttaatc
gataacgttccagacaactccagtctcttggacgagacccaggagtggcccctggagagc
ttctgtgatgagctctgtaatgacctcttcaacccctcatgggagattcgtcacggcgca
ggcacaggcctcagggagatcctcaagtctcaaggcgctggaggtgggaagctggtggga
agcactgcagaacagatggcacggcaccaccaggagtggctggaggatgtggtcatccgg
ctgctctgtgtctttgctctggaccgtttcggagattttgtctctgatgaggtggtggct
ccggttcgagagacctgtgcccagacactgggcgtggccttgcgccacatgactgacagc
ggtgttgccatgacagtagacatcctgctgaagctgctgacggaggaccagtgggaggtc
cggcacgggggtcttctgggcatcaagtatggcctggcagtcagacaggacctgatatcc
gctctgcttccacgggtgctccctgccatcacgcaggggctgcaggacctggatgatgat
gtcagagcggtggcggccgcggccctcatccctgtggtggacgggttagtgcagctactc
cccaacaaggtcccattcatagtgaactccctgtgggacgctctcctggagctggatgac
ctgacagcctccaccaacagcatcatgaccctactgtcctctctgctcgcctaccctcaa
gtccgacagtgcagcatgcagcagtccctaacggtcctcgttcctcgggtctggccattc
cttagacacaccatatcatcagttagacgggccgcactagagacccttttcaccctacta
tccaaagctgaccagagctgtgcattatggctcaaccaggtcctgcaagacatgctccga
cacatcttccagtcctgcatcctggagagcaatcaggagatcctggacctcatccaaaag
gtgtggatcgagctgctgcgccaggcccctcagcagtacgtagtagcagccagctgtccc
tggatgggcgcctggctctgtctgatgatgcaagcctctcacatccccatagacatcaac
atgctgctggaagtcaagtctcgctgcaaggagaaggctggtgggaagcctcgccaggga
gccttggttcaagtgaaggagactgttcaggagtacatcgccggggcagaaaccgtgacc
gaggacccagtgacgcgggactatgtggtgacacgggctcgactcatggccgctaagctg
ttgggggccctgtgtcggtgtatttgcgacccgcagctcaattcatcctcccaggacatt
cggccggctgagtcgctgggccagctgctcctcttccacctcaactccaagtctgccctg
cagcgcatcgttgtggccctggtcctctgtgagtgggccgccgtgcagaaggtggtgtca
gccatggtccagcctcgcctgttagccatcctgtcagagcagctgtactacgatgagatc
gccattcccttcacacgcatgcagaacgagtgtaagcagctcatcgccctgctggccgac
gctcagatcgacgtgcgcgaccgcctcaactgcagcgtgttcactatcgaccaggccaac
gaactggtgaccaccatctttgcggagtccaccgtgggcctggatacgaagtccaaacag
tttcatccactggacagcaagcgtcagcaggcccagtccacggtgggcgagaccagtgtg
gagtggcagcagctgcacctgcgcgtccacatgttcaccgcctgcgccgtggtcaacctg
caggcgttaccagacaagctgaacccagtggtgcgtccgctcatggaggcagctaagcgg
gaggagaacaccctggttcagggttacgccgcctccttcatcgccaagctgctgcagcag
tgtgctactaggcagccgtgtcccaattccaagatcgtcaagaacctgtgttcgtcgatc
tgcatggaccccctactaacgccctcctcggcctgccctgtgccccccactcagactgcc
aaagctggcatgtcagagaaagaatgcatgcaccacatggtcaataagactaagggcatt
atcaccctctaccgccaccagagggcagcatttgttatcaccagcaagaggggccccacc
cccaaaacctccaagaccgccaccactgaactgccacccggcagcaccatcaccacagat
actgatgagaataaaaagccatttctcgttcagagaagaggtgccgagttctctctgacg
acggttgccaggcactttggccaggagctgacggggtcactgccctacctgtgggagttt
gtggtgggacctttgagggccgtggtggagaacaaccaaggcatcgatgcaaagctccag
ttggagaggggggatgctgcagcccaggagctggtcaactctctgcaggtgctggaggtc
acggctggagccatggcccccgagctcaaacctctgttgttggagcacctgccccacctg
ttcacctgtctgcagcacccgtacacggccgtgcgtcacatggcggcgcgctgcgttggt
gtgctcagtaagatcgctaccatggagaccatgcacctgttcctggaatgtgtgctgccc
tggctggggtgcatcgaggatggcactaagcaggagggggccatcgaggccatggcctgt
gtgatggagcagttggatgtggacatcgtgccgtacattgtgctgctggtggtgccggtg
ctgggccgcatgagtgaccccagtgacagcgtccgtttcatggccacgcagtgcttcgcc
accctcatccgcctgctaccactggaggcgggtatcccggatcctcccaccatgtcggat
gatctgattcgccagaaggccagagagcgtcacttcatggaacagctgctggacagcagg
aagttggagaactacaagatccctgtgcccatcaaggctgagctccgcaagtatcagcag
gatggagtgaactggctgtccttcctgaataagtacaagctgcatggtatcctgtgtgac
gacatgggcctgggcaagaccctgcagtccatctgcatccttgctggggaccactacctc
agggcacaggagtatgccaagaccaaggcagcagactgcacccccctgccctctctggtg
gtgtgcccccccacactgacgggtcactgggtggacgaggtgggcaagttctgcaccgac
gagtacctgaaccccctgcactacacaggaccccccacggagcgagcacggttacagcat
caagtgaaaaagcacaacctagtagtagcctcctacgatgttgtacgaaacgacatagac
ttttttaggaatataaaattcaattactgtatcctcgacgagggccatgtgatcaagaac
gggaagaccaagctctctaaggccattaagcagttggcggccaacttccgagtcatccta
tcaggaacgcctatccagaataatgttctggagctgtggtcgctctttgacttcctcatg
cccggcttcctgggcacagagcgccagtttgctgcccgctatggcaagcccatcctggcc
agccgtgatgccaagagctcgtcgcgcgagcaagaggccggggtgctggccatggaggcg
ctgcatcgccaggtgctgcccttcctcttgaggagaatgaagaaggacgtgctgcaggac
ctgccccccaagatcatccaggactactactgcaatctcagccctctacaggttcagctg
tatgaggactttgccaagtcccgggccaaggtcagtgtggaggacaccatctctacagcc
tccatccacgaagaggagaagcccaagctgaaggccacgggccacgtgttccaggctctg
cagtacttgcggaagctgtgtaaccacccaggcctggtactgctgccacagcacccagag
tacaagcgcatcacagaccagctggcagcacaacactccagcctccgagacatccagcac
tcgcccaaactctcagctctcaaacagttgttgttagactgtggtctgggcagcagcggc
tcagcggagggcacagaggcggtggtggccccgcacagagtgctgatcttctgtcagctg
aagagcatgctggacatcgtggagcacgacctgctcaagccccagctgcccaccgtcacc
tacctgcgactggacggcagcgtcccgactggcctgcgccactccatcgtctccaggttc
aacaacgacccctccatagacgtgctgctgctcaccacccacgtgggcggtctgggtctg
aacctgaccggcgctgacacggtggtgtttgtggaacacgactggaaccctatgagagac
ctacaggccatggaccgcgcacacaggataggacagaaacgcgtggtgaacgtgtatcgt
ctgatcacgcgtggcaccctggaggagaagattatgggcctgcagaagttcaagatgagc
atcgccaacactgtcatcagccaggagaacgccagtctgcagagtatgggcaccgaccag
ctcctcaacctcttcaccttggacaaggaaggaaaggacgataagggcgagtcgtcctca
ggagggaaagcctccattaagaacgtgctggacggcctgggggacctgtgggaccagcag
cagtacgaaaccgaatacaacctggacagcttcatgcactcgctccactag
DBGET
integrated database retrieval system
