KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139410111
Entry
139410111         CDS       T10872                                 
Name
(RefSeq) ubiquitin-ribosomal protein eL40 fusion protein-like
  KO
K02927  ubiquitin-large subunit ribosomal protein L40e
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03010  Ribosome
ocla04120  Ubiquitin mediated proteolysis
ocla04137  Mitophagy - animal
ocla04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    139410111
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    139410111
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    139410111
   04137 Mitophagy - animal
    139410111
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:ocla03011]
    139410111
   04121 Ubiquitin system [BR:ocla04121]
    139410111
Ribosome [BR:ocla03011]
 Ribosomal proteins
  Eukaryotes
   Large subunit
    139410111
  Archaea
    139410111
Ubiquitin system [BR:ocla04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   139410111
SSDB
Motif
Pfam: ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 Rad60-SLD_2 DUF2604 TBK1_ULD Ubiquitin_5 zf-C4pol OTU1_UBXL Dsc3_N UBL_UBAC1
Other DBs
NCBI-GeneID: 139410111
NCBI-ProteinID: XP_071011656
LinkDB
Position
5:57225309..57227259
AA seq 128 aa
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTSN
LRPKKKLK
NT seq 387 nt   +upstreamnt  +downstreamnt
atgcagatctttgtgaagacgttgacggggaaaaccatcacccttgaggttgagcccagc
gatactattgaaaatgtcaaggccaagatccaggataaggaaggtattcctcctgaccag
cagcgtctgatctttgctggaaaacagcttgaagatggtcgtaccttgtcagactacaac
atccagaaagagtccaccctgcatcttgtgctgcgtctgcgtggaggcatcattgagcca
tctctgagacagctggcccagaagtacaactgcgacaaaatgatctgccgcaagtgctac
gctcgcctccatcctcgtgctgtcaactgccgcaagaagaagtgtggacacaccagcaac
ctgcgccccaagaagaagctgaagtaa

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