Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139410230
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Entry
139410230 CDS
T10872
Name
(RefSeq) DNA repair and recombination protein RAD54-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
139410230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocla03400
]
139410230
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
139410230
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
DEAD
Rad54_N
Zn_ribbon_InsA
Motif
Other DBs
NCBI-GeneID:
139410230
NCBI-ProteinID:
XP_071011803
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All DBs
Position
5:77842961..77850562
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AA seq
742 aa
AA seq
DB search
MRRSLAPSQVAKRKHGGDSSEDEDWNPEEDTKRKKGGNESRESYISPFRKPLTQLTNQPV
CVDSNAHEALIRSILSKPFKIPIPNYTGSLGIRALGLKRAGVRKSLHDPFENGALVLYEP
PVLSAHELIKAEKDKLPVHVVVDPVLGKVLRPHQREGVKFLWDCVTGRRIADSYGCIMAD
EMGLGKTLQCIALMWTLLRQSPDAKPEIDKAIVVSPSSLVRNWYNEVGKWLGGRITPVAI
DGGSKDEIDKKLVNFMTQHGLRVPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKN
SDNQTYQALNAMSAQRRVLISGTPIQNDLLEYFSLVHFVNAGILGTAQEFKKRFELPILK
GRDADASGKDRQVGEEKLKELISIVNGCLIRRTSDILSKYLPVKIEQVVCCRLTPLQSEL
YKLFLRQAKPLQTLQQQGKISVSSLSSITSLKKLCNHPALIYDKCVERDEGFDGALNLFP
TGYSTKAVEPQLSGKMLVLDYILAMTRSTTSDKVVLVSNYTQTLDLFEKLCRTRRYLYVR
LDGTMSIKKRAKIVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQ
AMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELR
ELFHLSEETTSDTHDRFRCRRCVNGRQVRPPPEDSDCTCDLSQWQHCSDKRGLRDPILQA
SWDAAISFVFHQRSHEDQRGVV
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgaggagaagcctagcaccaagccaggttgccaaaaggaagcatggaggagattcgtcc
gaggatgaggattggaatccagaagaagataccaaaagaaagaagggaggaaatgaaagc
agagaaagctatatctctcccttcagaaagcctttgacacagttgaccaaccagcctgta
tgtgtggacagcaatgcacacgaagccttaattcgaagtattctctcaaaaccttttaaa
atccccatccccaattacacaggctctctggggataagagcactaggactgaagcgtgcg
ggggtaaggaagtctcttcacgacccatttgaaaacggtgcactggtcctctatgagcct
ccagtgctgagcgctcatgagctgataaaagcagagaaagataaactgcctgtacatgtt
gtcgtggatccagtccttggaaaggtcctcagaccccatcagagagagggagtgaaattc
ctgtgggactgtgtgaccgggagacgtattgccgactcgtatggctgcatcatggctgat
gagatggggctggggaaaaccctgcagtgtattgccctcatgtggaccctgctgcgccag
agtcctgatgccaagcctgagatagacaaggccattgttgtttcaccctccagtttggtt
cgtaactggtacaacgaggtgggaaagtggctgggcgggcgcatcacaccggtggccatc
gatgggggatccaaggatgagatagacaaaaaactagtgaacttcatgacccagcatggc
ttgagggttcctactccaatcctgatcatttcatacgagacgttccggcttcatgctgaa
gttctacacaaaggaaaagtgggacttgtcatctgtgatgagggtcatcggctgaagaac
tcggacaaccagacgtaccaggctctgaatgctatgagtgcccagaggagggtgcttatc
tcaggcactcccattcagaatgacctgctggaatacttcagtctggtgcactttgtcaac
gctggcatcctgggaacagcccaggagtttaagaagcgttttgagctccccatcctgaag
ggtcgtgatgcagacgccagcggcaaagacaggcaggttggagaggagaaactcaaggag
ctgatcagcattgtcaatggatgcttgattcggagaacctcagacatcctctcaaagtat
cttcctgttaagatcgagcaggtcgtctgttgcaggctgacccccctccagtcagagctg
tataaactgttcctgaggcaggctaagcccttacagacactgcagcagcagggcaagatc
agtgtctcctctctgtcctccatcacctctctcaagaagctctgtaaccacccggctctc
atctatgataagtgtgtggagcgagatgagggcttcgatggggccctgaatctcttccct
acaggatactccaccaaggctgtggagccacagctttctggtaaaatgctggttctggac
tatatcctggccatgaccagaagcaccaccagtgacaaagtggtgttggtctccaactac
acacaaacactggacctctttgagaagctctgtcgaactcgaagatacctctacgttcgg
cttgatggcacaatgtccatcaagaagagagcaaagatagtggagaggttcaacagccca
tctagcccagagttcatatttatgctgagcagcaaagctggggggtgtggcctgaatctg
attggtgctaatcgcctggtgatgtttgaccctgactggaacccagccaatgacgagcaa
gccatggctcgagtctggagagacggacagaaaaagacctgctacatctacagactgctt
tcaacggggacaattgaggagaagatccttcagaggcaggcccataagaaggctctgagc
agctgtgtggtggacgaagagcaggatgtggagagacacttctctctgggggagctacga
gaactctttcatctcagtgaggagaccaccagtgacacgcatgacaggttccgctgtcgg
cgctgtgtgaatgggcgacaggtgcggccccctcctgaggactctgattgtacctgtgac
ctgtcccagtggcaacactgctctgacaagaggggcctgagagaccccatactgcaggcc
tcctgggacgctgccatctcctttgtcttccaccagcgctcccacgaggaccagagaggg
gtcgtgtga
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