Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139410285
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Entry
139410285 CDS
T10872
Name
(RefSeq) transcription factor Sox-14
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139410285
Transcription factors [BR:
ocla03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
139410285
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
SOXp
PROL5-SMR
Motif
Other DBs
NCBI-GeneID:
139410285
NCBI-ProteinID:
XP_071011873
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Position
5:complement(92379405..92380589)
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AA seq
235 aa
AA seq
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MSKPVDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSESEKRPYIDE
AKRLRAQHMKEHPDYKYRPRRKPKNLLKKDRYVFPLPYLGDTDHLKGLSASDSLLSASEK
VRAFMPPTSVPYSFLDPSQFTSSAIQKMTEMPHTMTTSSLGYGSLGYQNGAFGSLGCPSQ
HTHTHPSPTNPGYVVPCNCTAWSASSLQPPVAYILFPGMTKSGIDPYSSTHATAM
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagcctgtagatcatatcaagaggccaatgaatgcgttcatggtctggtcccgc
ggccagaggaggaaaatggcacaagagaatcccaaaatgcataactcagaaatcagcaaa
agacttggcgcggagtggaagctgctctctgaatccgaaaagcgtccttacatcgacgaa
gcgaagaggctacgagcacagcacatgaaagaacacccagactataaatacagacccagg
cgcaaacccaagaatctactgaagaaggacaggtatgtgttccctttgccttaccttggg
gacacggatcacttgaaaggactctcagcctcggactctctgttgagcgcatcagagaaa
gtcagggcattcatgcccccgacctcggtaccttactcgttcctcgacccgagccagttc
acctccagtgctatccagaaaatgacagagatgccccacaccatgaccaccagcagtttg
ggttacggctcgttgggataccagaacggcgcgttcggcagtttgggttgccccagccag
cacacccacacccacccgtcgcccacaaacccggggtacgtggttccctgtaactgtacc
gcctggtcggcgtcgagtttacagcccccggttgcctacatactttttccaggtatgacc
aagagtgggatagacccatattcatcaacacatgccactgctatgtaa
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