Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139410296
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Entry
139410296 CDS
T10872
Name
(RefSeq) gamma-aminobutyric acid receptor subunit alpha-5
KO
K05175
gamma-aminobutyric acid receptor subunit alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04080
Neuroactive ligand-receptor interaction
ocla04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
139410296
04082 Neuroactive ligand signaling
139410296
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139410296
Ion channels [BR:
ocla04040
]
Ligand-gated channels
GABA-A
139410296
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Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
BACK_BTBD8
Motif
Other DBs
NCBI-GeneID:
139410296
NCBI-ProteinID:
XP_071011887
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Position
5:96372316..96448959
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AA seq
476 aa
AA seq
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MGDGMRGVFSGMGDGMRCGCAMSKVWVFVLLVSVTCRLSLSQTPAVTTTEPLKEAELNDN
ITIFTRILDRLLDGYDNRLRPGLGEKVTEIKTNIFVTSFGPVSDTEMEYTIDVFFRQSWK
DERLRFQGPMKMLPLNNLLASNIWTPDTFFLNGKKSIAHNMTTPNKLLRLKDDGTLLYTM
RLTISAECPMQLEDFPMDAHACPLKFGSYAYPVSEVVYSWTQGAAKSVVVAEEGSRLNQY
HLIGQTAGTEDIYTSRGQYTVMMCHFYLKRKIGYFVIQTYMPCFMTVILSQVSFWLNRES
VPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFT
KRSWAWDGKKAMEDTRKKNPTALSKKPNNTCSAGVSYTPNLTKDNAISTISNSADIQLKL
AEVKTPDPKKTYNSVSKIDKMSRIVFPVLFGTFNLVYWATYLNREPVIKGAVNPYT
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgggtgacgggatgcgcggtgtgttttcaggcatgggtgacgggatgcgctgcggctgt
gctatgtccaaagtctgggtcttcgtcttgctagtgagcgtcacctgccgtctgagcctt
tcccagaccccagcagtaaccactacagaacccctaaaagaggcggagctaaatgacaac
atcaccatctttacccgaatactggacagactgctggacggctatgacaacaggctacgt
cctggtctgggagagaaggtgaccgagatcaagaccaacatatttgtgaccagcttcggc
cccgtttctgatactgaaatggagtacaccatagatgtgttcttcagacagagctggaag
gacgaacgtctgcgtttccaaggccctatgaagatgttaccgctaaacaacctcctggcg
tctaacatctggaccccagacaccttcttcctcaacgggaagaaatctatcgcccacaac
atgaccacgcccaacaaacttctccgactcaaagacgacgggacactgctctacactatg
aggttaaccatctcagcagaatgccccatgcagttagaggacttccccatggatgcccac
gcctgtcctcttaagtttggaagctatgcgtatcctgtgtctgaggtggtgtattcgtgg
acccagggagcagccaagtcagtggtggtggcagaggaggggtcacgactcaaccagtat
catctgataggacagaccgctggcactgaggacatctatactagcagaggtcagtacaca
gtgatgatgtgtcacttctatctgaagaggaagatcggctatttcgtcatccagacttac
atgccctgcttcatgaccgtcatcctctcccaggtgtccttctggctcaaccgcgagtct
gtccccgccaggactgtcttcggtgtgaccaccgtgctgaccatgaccactcttagcatc
agtgcccgtaactctctgcccaaggtggcgtatgccacagccatggactggttcatagca
gtctgttatgccttcgtcttctctgctcttatcgagttcgctaccgtcaactactttacc
aagaggagctgggcctgggatgggaagaaagccatggaggatacgcgtaagaaaaaccct
acggctctgtccaagaaacctaacaacacctgttcagctggggtcagctacactcccaac
ctgactaaggacaatgccatctccaccatctccaacagcgcagacatccagctgaaactg
gctgaggtcaagaccccggaccccaaaaagacttacaacagcgtcagcaagatcgacaag
atgtcccgcatagtgtttcctgttctgtttgggacattcaacctggtttactgggctacg
tacctcaacagggaaccagtgatcaaaggagctgtgaacccctatacatag
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