Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139410608
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Entry
139410608 CDS
T10872
Name
(RefSeq) aprataxin
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03410
Base excision repair
Brite
Enzymes [BR:
ocla01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
139410608
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
139410608
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
139410608
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
139410608
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
139410608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139410608
NCBI-ProteinID:
XP_071012017
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All DBs
Position
6:10757305..10758974
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AA seq
348 aa
AA seq
DB search
MSICLLISKNGRHKPINLPHLQTVVLGRSPETTIKDQKCSREQVELKADCNKGYISVKQL
GVNPTSVDSEVVGKGNQVEMRSGQQLHMVNELYPYTVCFKEDPSNSQSSVGTKRPCGPAS
EEREFHREPPGHKVPRKTEDSTQCKHGGSTSTNTRPEPQTTEKTETLGYWSQGLKASMQD
PKMQVYKDDRVVVIMDKYPKAHYHWLVLPWESIPSLKTLHRGHCDLLRHMNQVADRIVQQ
QCPDAGLLHFRQGYHAIPSMSHVHLHVISQDFDSPWLKNKKHWNSFTTDYFIESQEVIQM
LEKDGKVTVKQGTNELLKLPLCCHVCGMVLSTIPQLKEHLKSHPYGRL
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgtctatttgtttgctgatcagcaaaaatggaaggcataaaccgattaatctacctcac
ctacagacagttgtcttgggtcggagtccagaaacaacgataaaagaccaaaaatgttcc
agggagcaagttgagctcaaggctgactgcaacaaagggtatatcagtgtaaaacaactg
ggtgtcaaccccactagtgtggactctgaggtggtgggtaaaggcaaccaagtggagatg
agatctggccagcagctgcacatggtcaatgagctgtacccttatactgtgtgcttcaaa
gaggatccatccaactctcagtccagtgtgggcaccaagaggccctgtgggcctgcctca
gaggagcgggagtttcacagagagccccccgggcataaagtaccaaggaaaacagaggac
tccactcagtgcaagcatggagggtccacctccactaacacacggcctgaacctcaaaca
acagagaaaacagaaactttaggatattggagccaaggattgaaagcctcaatgcaagac
cccaaaatgcaggtctacaaggatgacagagtagttgttatcatggacaagtaccccaag
gctcactaccactggctggtcctgccctgggagtccatccccagtctgaagacactgcac
agggggcactgtgatctgttgaggcacatgaaccaggtagcagacaggattgtacaacaa
cagtgccccgatgctggcctgttacacttccgccagggctaccacgccatccccagtatg
agccatgtccatctacacgtgatcagccaggactttgactccccttggttaaagaacaag
aaacactggaattcattcacaaccgactatttcatagaatctcaagaagtcatccagatg
ctggaaaaggatgggaaggtcacggtaaaacaagggacaaatgagttgttgaaactacct
ctctgctgtcacgtgtgtggcatggtgctgtccaccataccacaacttaaggagcacctg
aaatctcacccctatggtagattgtga
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integrated database retrieval system
