KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139410621
Entry
139410621         CDS       T10872                                 
Name
(RefSeq) dmX-like protein 1 isoform X1
  KO
K24155  rabconnectin-3a
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04142  Lysosome
Brite
Membrane trafficking [BR:ocla04131]
 Exocytosis
  Small GTPases and associated proteins
   Rab associated proteins
    139410621
 Endosome - Lysosome transport
  Acidification regulators
   Rabconnectin-3 complex
    139410621
   RAVE complex
    139410621
SSDB
Motif
Pfam: Rav1p_C WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_IFT140_1st WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd EIF3I Beta-prop_HPS5 Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_Vps41 Beta-prop_DCAF12 PEP5_VPS11_N Beta-prop_DCAF4 Beta-prop_SPT8
Other DBs
NCBI-GeneID: 139410621
NCBI-ProteinID: XP_071012038
LinkDB
Position
6:12084840..12145331
AA seq 3025 aa
MNLHQVLTGAVNPGDNCFSVGSINNQPFTAYASGCDVVILGSDFERLQIIPGAKHGNIQV
GCVDSSLQGGQVAASYGSIVCVFEPVQLMNQKDRTSAELSYQWQKSGQFVLQSIVRNLAW
DPTGTRLLTGSASLQLWSNISDGFDEAGEQTDMTIGDPQCPWRCIWHCKTASPIQLMKFS
PDGEFFATAGQDDCLVKVWYGTSKWQSGVTKLFTPPEHNAQGELDFSFVYLAHPRTVTGF
SWRKTSKYMPRGSVCNVLLTCCKDSVCRLWAETLLPSDSLLSGHTLSHNNNGQSSDSLKS
SSSKKTPSRIKTQDRNSLELNLQESWRAPLRGVAQPSLTGRLPTQQNSHHNHKTNSVPHA
NALCHFHIAASINPATDIPLLPSITSLCGGDDEEPGGPFTVHWLNNKELLLTLAMEVFLQ
QLRGSVEQNHSENSQEELDYEEVEEASRRAAEGGPDVASTQLPAAAVEHQVEVLLEDWNR
GADMLFSIHPMDGSLLVWHVDWLDEYQPGMFRQVQVSFVSRIPVAFPTGDANSLSRSVVM
YACNKNVDLAIQHGRQRPAGLPHSSSVLIPYGQSKATSYSSSLRLSIFTPNVLMISTHSD
GSLNQWAVSFAEESAFSTVLSVSHKSRYCGHRFHLNDLACHSLLPLLLTTSHHNALRTPD
VDSVPAPSTTLSQPFGGGPSRVSLGAVSQDPNAIYSELILWRVDPVGPLSFSGGVSELAR
INSLHSSAFSNVAWLPTLIPSNCLGVYCNSPSACFVASDGHSLRLYQAVIEAKKLLSELS
NPDISKYVGKVFNIISQQSTAKPGCIIELDAITDFQGKETQLLHVFEEDLILGSERREAT
QEAPAIETASSQPGFSARFFLVVVEFTQTGRSFLHMWHLQLAAGQITMDETGAPPEKENM
TSSPMNSSFSFETFSSPSAQKNKPCTSNLQSASRLTLATHRLYSQELALPDGVEVISVTP
SAGHLSASSLQPAGGAPYLLATSCSDGKVRFWRCRVAAVEPDTKELTYTWEEWPLLVEEG
LGNSSAVTVSGRPVTVSCCHTSRIAVAYRHNPSPHLSPNHLSPNPQQGVREPLVHVGLFQ
CESTGGSHWVLEQTLVLDASTPTGNNNNNMESGVKDLNVENNNLDIYLPNDDCLGTSGKS
LVHLDWVSREDGSHILTVGIGSKLYMYGLLSGKPPELGLSEGPREQSSSRLVLLRSVDLV
SSVEGSLPIPVSLSWVRDGILVVGMDCEMHVYSQWQPPALAKSTASNTTTTDMGSVSSLL
AAMKQSHEEGLNPVPPKKSLTRSMTSLAQKLSGKRTVYDLPAEMEDYGLFEAAHHLFPTL
PQYHPVQLLELMDLGKVRRAKAILSHLVKCIAGEIVALKDNGTNQDKRLRSRTISAGGST
SRDPKLFSKGESSDYTEIDSVPPLPLYALLAADEDCSPKPKDKVASLSGDSGHGSSQTDA
YDELFQSSGVGVDDLEHMDSDQEDGGAKVIDLSQYSPTFFGPEHAQVLSSHLLHSSLPGL
TRMEQMSLMALADTIATTSTDIRESQSRGKGGETLDECGLKFLLAVRLHTFLLTTLPPAH
RAQLLRQGLSTCHYAWAFHSEAEDELLHMLPALQKGDPTWPELRAMGMGWWLRSTNKLRR
CIEKVAKASFQRQNDPLDAAIFYLAMKKKAVVWGLYRSQKNAKMTTFFSNNFGEERWRRA
ALKNAFSLLGKQRFQHSAAFFLLAGSLKDAVEVCLEKMQDLQLALVISRLYESEFETSST
YKRILQRHVLGQDRQLPAHQDPFLRSTAYWVLEDYSRALDTLLEQPAAPNLASSTQAGHT
TQPGSTSSTSLCSPEVFNFYTYLRTHPLLLRRHFGSSEKTRVGLTAEGRMANSISLVERR
LFFTAAYAHLQAGCPMLALEVLSKMPKVVKRSKLPQDDTTNPDLSETKKEQASDLDWSQP
ALNGFESVSDSLSNSQSDSVLSFDWGQPSVSVQDEALELKWDSDKEEEEEEDNDEPQGLV
MKSADNTSSVFQDAISPLTETLLDEGDFLMPSEDILAAQLKFSACLKILTTELRTLSTGY
ELDGGKLRYQLCQWLEREVVALQRCCSYKPCLPELALGMAGPGGEEEAQAHPGEAQRTRR
HWLQSNQPLLRMFLSYCSLHGSHGGGLASVRMELILLLQESQQDDGVQSAVAPYLHHASI
PLLLACTASAKTVVANPIVHLTNLTHDILHTINALDSPPHPDVINNEIYVMHTLAASLSA
CIYQCLCDGHNHSHVNQFTGIVYQSILSFQHHPVRTVSMEETVLPNTHPAQWPGISTLIR
LLNSAGEESQPGLAVLLCEILTAVFLSLFVHGLATHSSNELFRIVAHPLNSKLWVAVFGG
GARTPITEKPSKAKSLPASEEFDRKPRRFKLLSSSPRSASREGPETPSPTSPVVEQETSI
FKEHFVPPELSIWDYFIAKPFLPPSESRVEYDSEESQGSQDEDDDDEDEFGDFDPNSPSR
EHSNPNSYSWCLMRLAMVQLVLGSLKSFYPMAGHDLLDLPVGSPLCHAVLKTLQRWEQVL
LKRLEIFGGPPSKYISTHPLDETAASGPAILRHKALFEPSNTPFRSSHHSALPVKRLWQY
LVKQEEVQETFIRNIFTKKRNQNESVEDLNENDKCSGMEEPSCNQSEADLGYPGGKARII
HKDSDIITAFAINKANRNCLVMASTHDIQELDVSSILATQILTWIDDDTEAEAKGDDFLV
IQARDDFNTLHGTTPYTHSSLGTPINMPWLGGLQTGRGAAVLIKRNINNVRRMTSHPTLP
YYLTGAQDGSVRMFEWGHSQQIICFRSPGNSRVTRIRFNHQGNKFGIVDADGALRLWQTN
TTGNTPKPYLTLQCHNKTAHDFVFVGSSSLIATAGLSTDNRNVCLWDTLVNPMNSLVHAF
SCHESGATVLSLAPRQQLLITGGRKGWISVLELPHRHQRQSFQAHDSPVKALAVDPTEGS
FISGSAEGNIKVWSLSMQCLLHQFPNEHARQSLFRNLGTGVMQIEVGPANHIFSCGADGT
MKMRILPDRFSVNNGNLKNDVKFII
NT seq 9078 nt   +upstreamnt  +downstreamnt
atgaatcttcaccaagtccttactggggccgtcaacccaggggacaattgtttttctgta
ggtagcataaacaaccaaccattcacggcatatgcctctggctgtgacgttgtgattttg
ggcagtgactttgaaaggctacagatcatcccaggagcgaagcatgggaacatccaggtg
ggctgtgtggacagctcactacagggaggccaggttgcagcttcctatggaagtattgtc
tgtgtctttgagccggttcagctcatgaaccagaaggacaggacatcagcagaactgagc
taccagtggcagaagagtggacagtttgttttgcagtccatagtgcgtaacctggcctgg
gaccccacaggcactcgtctcttaactgggtccgctagcctgcagctgtggtccaatatc
agcgatggttttgatgaggcaggggaacagacagacatgacaattggtgaccctcagtgt
ccctggaggtgtatctggcactgcaaaaccgcctccccaattcagctcatgaagttctct
ccagatggagaattctttgctactgccggacaggacgactgtctggtcaaagtgtggtac
ggcacgagcaaatggcagtctggcgtgaccaagctgttcaccccaccggagcacaacgct
cagggcgagctcgacttctcttttgtctacctggcacacccacgcactgtaacaggcttc
tcctggaggaagaccagcaagtacatgccacggggttcagtgtgcaatgttctactgacg
tgctgtaaggacagtgtgtgtcgcctgtgggccgagaccctgcttcccagtgacagcttg
ctgtccggacacacgctcagtcacaataataacggacagagcagcgactcgctgaaatcg
tcaagcagcaagaagactccctctcgtatcaaaacacaggacaggaattccctggagttg
aatctgcaggagtcgtggagagcccccttgagaggtgtggcccagccctccctaaccggc
cgcctcccgacccagcagaacagtcaccacaaccacaagaccaacagcgtgccccatgcc
aacgctctctgccacttccacattgctgccagcatcaaccctgccacagatatccccctg
ctgccctctatcacgtcgctgtgtgggggagatgacgaggagcctggcgggcccttcacc
gtgcactggctcaacaacaaggagctgcttctcaccctggcaatggaggtgttcctgcag
cagctcagaggcagtgtggagcagaaccactcggaaaactcccaggaggagcttgactat
gaggaggtagaggaggcttctaggcgagcggcagagggaggacccgatgtggcgtccacc
cagctgcctgctgcagcggtggagcaccaggtagaggtgctactggaggactggaacaga
ggggcagacatgctgttcagtatccaccccatggatggctctctgctggtgtggcatgtg
gactggctggatgaataccagcccggcatgttccggcaggtccaggtgtcctttgtgtcc
cggattcctgtggccttccccacgggcgacgccaactccctgagccgcagcgtggtcatg
tacgcctgtaacaagaacgtggacctagccatccaacatggccgccagcggcctgccggc
ctgccacattcctcgtcggtgctgattccctacggccagagcaaggcgacctcctactcc
agcagcctccgcctcagcatcttcacccccaacgtgctcatgatctccacgcactccgat
ggctccctcaaccagtgggcggtcagcttcgcagaggagtcggccttctccactgtgctc
agcgtgtcccacaagtcacgctactgcggccaccgcttccacctcaacgacctggcctgc
cactccctgctgcccctgttgctcaccacctcacaccacaatgctctgcgcacccccgac
gtggacagtgtccccgccccctcgaccaccctttctcaaccctttgggggcgggcccagc
cgggtgtccctgggcgctgtgtcgcaggaccccaacgccatctacagcgagctcattctg
tggagggtggatccagtgggacctctgtccttctctggaggggtgtctgagctggccagg
atcaactctctccactcctccgccttctccaatgtagcctggctgcccacacttatcccc
agcaactgccttggtgtctactgcaactctcccagtgcctgcttcgtggccagtgacggt
cactcgctgaggctttatcaggctgttattgaagccaagaaactactcagtgagctctcc
aacccagatatttcaaaatatgtcgggaaagtttttaacatcatcagccaacaatcgact
gctaaaccaggttgtatcatcgagctagatgccattactgacttccagggaaaggagact
cagctgctgcatgtgtttgaagaggatctgattctgggcagtgagcggagagaagccact
caggaagctcccgctatagagactgcctccagccagccaggcttctccgcccgcttcttc
ctggtggtggtagagttcacccagactggcaggtctttcctgcatatgtggcacctgcaa
ctggcagctggccaaatcactatggacgagaccggcgctccgcctgaaaaggagaatatg
acctcgtcgccaatgaacagctcctttagctttgagacgttcagctccccctcggcccag
aagaacaagccttgcacgtccaacctgcagagtgccagtcgcctcaccctggccactcac
aggttgtacagccaggagctagctcttccagatggtgttgaggtgatcagcgtcacgccc
tcagcaggtcatctgagcgcgtcctccctgcagccggcaggtggcgctccctatctcctg
gccacttcctgttcagacgggaaggtgaggttctggaggtgcagggtggctgcagtggag
ccagacaccaaggagctgacgtacacctgggaggaatggcctctattggtggaggagggg
ctgggcaacagcagtgccgtgaccgtgtcaggcagaccagtcacggtcagctgttgtcac
accagccgcattgcagtggcctaccgacacaaccctagccctcacctgagccctaaccac
ctgagccctaaccctcagcagggtgtcagggaaccactggtccatgtagggttattccag
tgtgagtccacaggtggctcccactgggtgctagagcagaccctcgtcctggatgcctcc
actcccactggtaacaacaacaataacatggagagtggcgtcaaggacctgaatgtggag
aataataacctggacatctatctgcccaatgacgactgcctggggacctctggtaagagt
ctggtccacctggactgggtctccagggaggacggctcccacattcttactgtggggatt
ggttccaaactctacatgtatggcctgctctctggcaaacctcctgaactgggcctgtct
gagggccccagggagcagagctcctcccgcctggtcctcctgcgctccgtggacctggtc
tcctccgtggaaggttccctgcccatccccgtatccctgtcctgggtgagagacggcatc
ctggtggtgggcatggactgtgagatgcacgtgtattcccagtggcagcccccggccctg
gccaagtccacggcctcgaacaccaccaccacagacatgggcagtgtgtcatctctcctg
gctgcaatgaaacagagccatgaggagggcctgaaccccgttcctcccaagaagagcttg
accaggtccatgaccagcctggcccagaagctgagtgggaagaggacagtgtacgacctg
cctgcggagatggaggactacgggctgtttgaggcggcacaccacctgttccccacactg
ccccagtaccacccggtacagctgctggagctcatggacctggggaaggtccggcgggcc
aaggccatcctctcccatctcgtcaaatgcattgccggggagattgtggccctcaaagac
aacggcaccaaccaagacaagcgtctccgctcgcgcaccatcagcgccggcggcagcacc
tccagagaccccaagctcttcagcaagggcgagagctcggactacacagagattgactcc
gtccctcccctgcccctgtacgcgctgctggcggccgacgaggactgctcccccaagccc
aaggacaaggtggccagcttgagtggagacagtggccacgggtccagtcagacggacgcc
tacgatgagctcttccagagcagcggggtgggtgtggacgacctggagcatatggacagc
gaccaggaggacggcggtgctaaggtcatagacctgtctcaatatagccccaccttcttt
gggccagagcacgcccaggttctgtccagccacctgctccactccagcctgccgggactg
acccgcatggagcagatgtccctcatggccctggctgacaccatcgccaccacaagcact
gacatccgggagagccagagcaggggtaaaggtggagaaactttggatgagtgcggtctg
aagttcctgttggctgtgaggctccatacgttcctgctgaccaccctgcctcctgcccat
cgcgctcagctgcttcgccaaggtctgtccacctgtcactacgcctgggccttccactcc
gaggctgaggacgagctgctccacatgttacctgccttgcagaaaggagaccccacctgg
cccgagctccgcgccatgggcatgggctggtggctcaggagcaccaataaactccggagg
tgtatagaaaaagtcgcaaaagcgtcttttcaaaggcagaacgatcctctggacgccgcc
atcttctatcttgctatgaaaaagaaagcggtggtctggggactgtacaggtctcagaag
aatgctaaaatgactacgttcttcagcaacaacttcggtgaggaaaggtggaggagggct
gccttgaagaacgccttctctctgctggggaagcagcgcttccagcactctgcagccttc
tttcttttggcaggctccctcaaggatgctgtggaggtttgcctggagaagatgcaggac
ctgcagctggccctggtgatctcccggctctatgagtccgagtttgagacgtcctccacc
tacaaacgcatcctgcagaggcacgtgctgggccaagaccgccagctccccgcccaccag
gaccccttcctgcgtagcacggcctactgggtactggaggactacagccgggccctggat
actctgttggagcagcctgctgccccaaacctagcgtcctccactcaggctggccacaca
actcaaccaggtagtacctcgtccacgtccctctgtagcccggaggtcttcaacttctac
acctacctccgcacacatcccttactgctgcgccgccattttggctcgtctgagaagacc
agggtgggtctgacagcggagggtcgcatggcaaactcaatcagcctggtggagaggagg
ctgttcttcaccgcagcctacgctcacctgcaggccggctgccccatgctggccctggag
gtcctctccaaaatgcccaaagtggtcaaaagatccaagctcccccaggacgataccacc
aaccccgacctgagcgagacgaaaaaggaacaggcgtcagatttggactggtctcagccc
gcgttgaacggcttcgagtctgtgtcagacagcttgtccaatagccaatcggactctgtg
ctgagttttgactggggccagccctctgtgtcggttcaggatgaagccctggagttgaaa
tgggacagcgacaaggaggaggaagaggaggaggacaacgacgaaccacagggcttggtc
atgaagagtgccgacaacaccagtagtgtctttcaagacgccatctctccattgacggag
acgctgctggacgagggtgacttcctcatgccctctgaggacatcctggccgctcaactc
aaattcagcgcctgcctaaagatcctgaccacggagctgcggactctgtccacgggttac
gagctggacggggggaagctccgctaccagctgtgccagtggctggagagggaggtggtg
gccctgcagaggtgctgcagctacaagccctgcctgccagagctggccctgggaatggca
gggccgggtggagaggaggaggcccaggcccaccctggtgaggctcagcgcacccgcaga
cactggctccagagcaaccagcctctcctgcgcatgttcctcagctactgcagcttgcac
ggctcccacggaggaggcctggcctcggtgcgcatggaactcatcctgctgcttcaggag
tcccaacaggatgatggtgtccagtcagccgtcgccccctacctgcaccacgcctccatt
cctcttctgctggcctgcactgccagtgccaagacagttgtggccaaccccatcgtccat
ctgaccaacctcacccacgacatcctgcacaccatcaacgcactggactccccgccacac
ccagacgtcatcaacaacgagatctatgtgatgcacacactggcagcctcgctgtccgcc
tgcatttaccagtgtctctgcgacggccacaaccacagccatgtgaaccagttcactggg
atagtgtaccagagtatcctctccttccagcaccacccggtacgcactgtgagcatggag
gagactgtactgcccaacacccacccagcacagtggccaggtatcagtaccctgatccgc
ctgttgaactctgctggtgaggagagccagccaggcctggccgtgttattgtgtgagatc
ctgacggccgtcttcctcagcctgtttgtgcacggcctggccacccactctagcaacgag
ctgttccgcatcgtggcccacccactcaacagcaagctgtgggtggctgttttcggaggg
ggggcgcgtacccccatcacagagaagcccagtaaggccaagtcacttccagccagtgag
gagttcgataggaagcccaggcgcttcaagctgctgtcgtcgtcgccacgcagtgcctcc
agagaggggccagagacccccagcccaaccagccctgtggtggagcaagagacctccatc
ttcaaagagcactttgtccccccggagctcagcatctgggactactttatcgcaaagcct
ttcctccctccgtcagagagcagggtggagtacgactcggaggagagccagggcagtcag
gacgaggatgatgatgatgaagacgagtttggagactttgaccccaactctcctagccga
gaacattccaatcccaactcctacagttggtgtctgatgcgcttggccatggtccagctg
gtcctaggcagcctgaagtcattctaccccatggcaggacacgacctactagatctacct
gtgggctctcctctgtgtcacgcggtgctgaagaccctccagcgttgggagcaggtgttg
ctgaagaggctggagatcttcggggggccgccctccaagtacatctccacacaccctctg
gacgagacggctgcctcaggccccgccatccttagacacaaagccctgtttgagccctcc
aacacacctttcaggtccagtcaccactctgccctgcctgtgaagaggctgtggcagtac
ctggtcaaacaggaagaggtgcaggaaacgttcatccgcaatattttcaccaagaaacga
aaccaaaacgagtcggttgaggacctcaatgaaaatgacaaatgttcagggatggaggag
cctagctgtaaccagagcgaggcagatctgggctaccccggaggcaaggcccggatcatc
cacaaggactcggacatcattaccgccttcgccatcaacaaggctaatcggaactgctta
gtcatggcctccactcatgacatccaggagctggacgtgtcctccatcttggccactcag
attctgacgtggatcgatgacgatacggaggccgaggccaaaggtgatgacttcctggtg
atccaggcccgggacgacttcaacaccctccacggcaccaccccctatacccacagcagc
ctagggacgcccatcaacatgccctggctcgggggcctgcagacggggagaggcgctgcc
gtgctcatcaaaaggaacatcaacaacgtgagaaggatgacctcccacccaaccttgcct
tactacttaacaggagcgcaggacggaagtgtccggatgtttgagtggggccactctcag
cagatcatctgcttccgaagtccaggcaattccagagtcacacggatacgattcaaccac
caaggaaacaagtttggtatcgttgacgctgacggagccctacgtctatggcagaccaat
acgactgggaacacccctaaaccctacctgacattgcagtgccataataagacggctcac
gactttgtgttcgtgggctcatcctccctcatagccacagcagggctgtcaacagacaac
aggaatgtgtgtctttgggatacattggtgaatccaatgaacagtctagtgcacgccttt
agttgtcatgagtcgggggccacggtgctgtcgctggcccccaggcagcagctgctaatc
acaggtggcaggaagggctggatcagcgtgctggagctcccccacaggcaccagcgccag
agcttccaggcccacgactcccccgtcaaggccctggctgtggaccccaccgagggcagc
ttcatcagcggctctgccgagggcaacatcaaggtgtggagcctgtccatgcagtgctta
ctgcatcagttccccaacgagcacgctcgccagtccctgttccggaatctgggcacgggc
gtgatgcagatcgaggtgggcccggccaaccacatcttttcgtgtggcgccgatggtacc
atgaagatgaggattctccctgaccgcttcagcgtcaacaacggcaacctgaagaacgac
gtcaagttcatcatttag

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