Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139410684
Help
Entry
139410684 CDS
T10872
Name
(RefSeq) ubiquitin-protein ligase E3B-like
KO
K10588
ubiquitin-protein ligase E3 B [EC:
2.3.2.26
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
139410684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139410684
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
139410684
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
HECT type E3
139410684
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
IQ
DUF7462
Motif
Other DBs
NCBI-GeneID:
139410684
NCBI-ProteinID:
XP_071012184
LinkDB
All DBs
Position
6:17938372..17952652
Genome browser
AA seq
1065 aa
AA seq
DB search
MFSATQSSKSEFLDKARQAREERKGYKERERAATLIQALVRRFLCRCKLQKQIRKEVDDF
FQDVGTTKRNALSIFKIARKLLFIFCQEDKLRFEKLCRSILGSMEVENEPKVWYVSLALS
KDLTIPWIKQIKDVLWVSCNFLKKLKPDILQDNKMVTLYLTMLVTFTDTSTWKIVRGKGE
ALRPALTRICENIMGHLNQKGFYSILQILLTNGLARSRPSLTKGTLTAVFTLALRPVIAA
HFSDNLLRSLLIHIMSVPAVVSHINTITPECMATIQTHDLLRKFTLFLSREEQCVDICVC
LEGSHTLCLLGNLIHLGYLNEKVLEEEANHFVKDLTDMLSYCQRYVSQKKSNLTHWHPVL
GWFSQTVDYGLNESMPLVTKQLQYLWGMPVIRTLFSDVLSKKLETQEPTPPPQPTTSQNN
LPVKSLFKRAFQKSASVRNILKPVGGRRVDSAEVQKVCSICVLYQTALTTLTQIRLQILT
GLTYLDDLLPKLWAFICELGPQGGLKLFMECLNNDTEESKQLLAMLMLFCDCSRHLITIL
DDIEVYEEQISFKTEELVTISSFLNTFVYKMVWDGILENAKGEKLDLFHSVHGWLMVLYE
RDCRRRFSPDDNWLRKDLKPSLLFQELEKGKRRAQLLLQYIPHVIPHKNRVLLFRNIITK
EKETLGLVETSSASPHVTHITIRRSRMLEDGYDQLRRLPVNSIKGVIRVKFVNDLGVDEA
GIDQDGVFKEFLEEIIKKVFNPALNLFKTTSGNERLYPSPTSYIHENHLQLFEFVGKMLG
KAMYEGIVVDVPFASFFLSQVMGHHHSTFYSSIDELPSLDSEFYKNLTSIKRYDGDVGDL
GLTLSYDEDVMGQLVCHELIPGGKTMQVTNENKISYIHLMAHFRMHTQIKEQTAAFIRGY
RSIINPEWLHMFSTPEVQRLVSGDNAEIDLDDLKKHTVYYGGFHSSHRVIIWLWDILSSD
FSSEERAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTIRK
KEPGGRLPTSSTCFNLLKLPNYSKKSILRDKLRYAISMNTGFELS
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgtttagtgcaactcagagttccaagtctgagttcctggacaaagccaggcaggcacgt
gaggagaggaaggggtacaaagagagggagagagcagccactctgattcaagcgctggtc
aggagattcctctgtcgctgcaaactccagaagcaaataaggaaagaggttgatgacttc
tttcaagatgtcggaacaacaaaaagaaatgcactatcaatttttaaaattgctcggaag
ttgttattcattttttgtcaagaggataagctgaggtttgagaagctttgtcgctccatt
cttggtagcatggaggttgaaaatgagcccaaagtttggtatgtgtcactggccctttcc
aaagacctcaccatcccatggataaagcagatcaaagatgttctgtgggtctcctgtaat
tttctgaaaaaattaaagcctgacatcctgcaggacaataagatggtgactttgtacctt
accatgctggtgaccttcacagacacgtcaacctggaagatagtgagagggaaaggagag
gccctcagaccagcgttgacccggatctgtgagaacatcatggggcatctcaatcaaaag
ggattttattcaatactgcagattctactcaccaacggattggcgcgctccagaccctct
cttaccaagggcacactcacagcagtattcacgttggcattaagacctgtcattgctgct
cacttctctgacaacctgctgaggtctcttctcatccacatcatgtctgtcccagctgtc
gtctcccacatcaacaccatcaccccagagtgcatggccaccatacagacccacgacctg
ctgaggaagttcaccctgttcctgagccgcgaggagcagtgtgtcgacatctgtgtctgc
ctggaggggagccacacactgtgcttgctgggtaacctgattcacctgggctacctcaac
gagaaagtcctggaggaggaggccaaccactttgtgaaagacctgacggacatgctgtcc
tactgccagagatacgtgtcccagaagaaatccaacctcactcactggcacccggtccta
ggctggttttcccaaactgtagactacggtctgaatgagtctatgccactggtcaccaag
cagctgcagtacctgtggggcatgcctgtgatccggactctcttcagtgacgtgctcagc
aaaaagcttgagacccaagagcccacgcctccaccacagcctaccacgtcgcagaacaac
ctgccagtcaagagcctctttaagcgggcgtttcagaagtctgcctcggtgcgcaacatc
ttgaagccggtcggcgggagacgagtggactccgctgaggtgcagaaggtgtgcagtatc
tgtgtgctgtaccagacagccctcaccacgctcactcagatacgactgcaaatcctcact
ggcctaacctacctggatgaccttctgcctaagctgtgggccttcatatgcgagctaggc
ccccagggaggcctcaagctgttcatggagtgcctgaacaacgacacagaggagtctaag
cagctgctggccatgctcatgctgttctgtgactgctccagacacctcatcacgatcctg
gatgacatcgaggtttacgaggagcagatctcatttaagacagaagagcttgtcaccatc
tcctcgtttctcaacacatttgtgtacaagatggtctgggacggcattttagagaatgcc
aagggggagaagctggacctgttccacagtgttcatggctggctgatggtgctctatgag
cgggattgcaggaggaggttctcccctgatgataactggctgcgcaaggatctgaagccg
agccttttgttccaagagctggagaagggcaagaggagagctcagctgttactgcagtac
ataccacatgtcattccccacaaaaacagggtcctgctgttccggaacattattaccaag
gagaaggaaaccttgggattggtggaaacaagctccgcgtctccgcatgtcacacatatc
accattcgccgctcacggatgttagaggatggttatgaccaactccgccggttgcctgtc
aactccatcaaaggcgtgatccgtgtgaagtttgtcaacgacctgggtgtggacgaggcc
ggcatcgaccaggacggcgtcttcaaggagttcctggaagagatcatcaagaaagtcttc
aacccggctctcaacctctttaagaccaccagtggcaacgagaggttgtacccctcccct
acatcctacatccacgagaaccacctgcagctttttgagtttgtggggaagatgcttggc
aaagcaatgtatgagggcatcgtggtggacgtacccttcgcctccttcttcctcagccag
gtcatgggtcaccaccacagcaccttctacagctccatcgacgagctgccctccctggac
tctgagttctacaagaacctcacctcaatcaagcgctatgacggggatgttggtgatttg
ggtctgacactatcgtatgacgaggacgttatgggacagctggtctgtcacgagctgatt
cctggaggaaagacgatgcaagtcaccaacgaaaacaagatcagctacatccacctgatg
gcgcacttccgcatgcacacgcagatcaaggagcagacggcagcttttatccgaggatac
cgcagcatcatcaaccccgagtggctgcacatgttctccacccctgaggtccagcgcctc
gtctccggggacaacgccgagattgacctggacgacctcaagaaacacacagtttactat
ggaggtttccacagcagccatcgggtcatcatctggctgtgggacatcctgtccagtgac
ttctcctctgaggaaagagccatgttcctcaagtttgtcaccagttgttcaagacccccc
ctcctaggttttgcctacctcaagccccctttctccatccgctgtgtggaggtgtctgac
gatcaggacactggggacaccctaggcagcgtcctccggggtttcttcaccattcggaag
aaggaaccaggcggtcgcctccccacctcgtccacctgcttcaacctgctcaagctgcct
aactacagcaagaagagcatcctgcgtgacaagctccgctacgccatcagtatgaacaca
ggttttgagctctcataa
DBGET
integrated database retrieval system
