KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139410707
Entry
139410707         CDS       T10872                                 
Name
(RefSeq) ubiquitin-associated protein 2-like isoform X1
  KO
K26545  ubiquitin-associated protein 2
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ocla04121]
    139410707
   03400 DNA repair and recombination proteins [BR:ocla03400]
    139410707
Ubiquitin system [BR:ocla04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Multi subunit type E3 associated proteins
    139410707
DNA repair and recombination proteins [BR:ocla03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     139410707
SSDB
Motif
Pfam: UBAP2-Lig UBA_RAD5A GIP1_N UBA_4 Methyltransf_32
Other DBs
NCBI-GeneID: 139410707
NCBI-ProteinID: XP_071012228
LinkDB
Position
6:complement(18925811..18959599)
AA seq 1134 aa
MMTSVVSNPARGTRDRALPTTTQTTHPQKQIQATAEQIRLAQMIYDKNDADFEDKVKQLI
EVTGKTQDECMVALHDCNEDVNRAINFLLESTSDTTTWETVGKKVRGKEGGPSEMKDNRE
KRGDREASRSRGVPNRRGRGANRSREVRPEENGFEMCSGDKVADRGRRGRGVAGRGLGGR
GRGRAAGGNRFSSQGMGIFNPADYNANSSGSHQETWEAEGNEGGDGIGGTWRGNLEDWAA
EDWNEDLSETKVFTASAPANHITSGHNVDMGSLLPKTGGVEADLGGMEPPAPVCVGGQSL
VFTNSHHNCARTATHSYASAASGTSYTHGALSSVLGSGFGALSGPKPNLGEVRIPEQLNG
PQLTPRTHQQLVTADNSSVAKESGPPAVQGSAPISASETKAPRVEKGPVLTSHLDLKMQP
EPSSVLSQLAQRQQQAQHSSLPQAEPLSLPPQVPTPPGHYDAGPPPPRDGPSLDHQAPMA
EPPQRQIKTQRRRVPPPSKIPSSAVEMPGSADVSGLNVQFGALDFDSEPSVIDMGHQAEP
ARDLAPTAVPQPQSSLFSKPGPVSEPLGSLSSMPPSISDPSFPSLGLPSATPSPSLGLPS
AAPPSTSSASRVDNGPVQRMPPHLGYPQSKDAPAAPLTVSHQHWICQNGYGGVRTQGPED
SMSLVSRTPKPQSPPMSSDSGPVHHVPSPASTPSYSAPLPSVSSHVTSTYSSGSALSTSS
SLTMTSEESSSLHAFSSSSGPSINAAVSSSNGMMHVPGAPGLSTNGNTTLSAAGRTAQPQ
PLLNTTSGKAPPNLAQGLPPLLANQYIMGPGGLLPAYPQIYGYEDLQMLQSRLPMDYYGV
AFPGTTATMPGRDGLANNPYSGEATKFGRGDSSSPAPPNSLSQGPSAQPQQPPQAQSQGL
GQSQGQQNQAFLNPPLPPGYGYTGLPYYAGMPGVPSAFQYGPTVFVPPASAKQPNMGLGN
PSSQYHQQHQPSYGQHAYGTAFDDLSQGHAGEYSKGGYGGSAQSQAKSAGSGPGKAPGLS
SSGSSGGVPDIGASMYSKTQSFDKQGFHAGTPPPFSLPSALGGTGPLNPGGAPGYAPPPF
LHILPAHQQPHSQLLHHHLTQDGQGGPGQRNQSSSMQQKSQGSKSSYGSPYWAN
NT seq 3405 nt   +upstreamnt  +downstreamnt
atgatgacttcagtggtcagcaatccagctcgaggaactcgggacagagcgctgcccact
accacacaaaccacacacccacagaaacagatacaagccacagcagaacagattcggctt
gcccagatgatctatgacaaaaatgatgctgactttgaggataaggtcaaacagctgatt
gaggtgactgggaagacccaagatgagtgcatggtggccctccatgactgcaatgaggat
gtcaacagagccatcaatttcctgctggaaagcacctctgacacaaccacctgggagaca
gttgggaaaaaggtgcgagggaaggaggggggtccctcggagatgaaggacaaccgagag
aagagaggagatcgcgaggcaagccggagccgcggagtccccaacaggaggggccgtgga
gccaaccgcagcagagaggttcggccagaagagaatgggtttgaaatgtgttctggggat
aaagtggccgaccgtggtcgcagggggaggggcgttgctggcagagggttggggggtcgc
ggaaggggaagagcagctggtgggaacaggttctcctctcaggggatggggatcttcaac
cccgctgactacaacgctaactctagcgggtctcaccaggaaacttgggaagcagagggg
aacgaaggtggagatggtataggaggaacatggagaggcaacttggaagactgggctgca
gaagactggaatgaggatctgtctgaaaccaaagtgttcactgcctctgctcctgcgaac
cacatcacatctggacacaatgtggacatgggctcgctgctgcccaagacgggcggtgtg
gaggcggatctgggtggcatggagccccctgcccctgtgtgcgtggggggccagagcctg
gtgttcaccaactctcaccacaactgcgctcgcaccgccacacacagctatgccagtgct
gcctctggcactagctacacccacggtgccctgtcctcagtccttggctctggatttggg
gctctgagtgggcccaagccgaacctgggtgaggttaggataccagaacagctcaacggg
ccccagctcaccccgcggacccatcagcagctggtcaccgcggacaacagcagtgtcgcc
aaagaatccggtccacctgcagttcaaggctccgcccccatttcggccagcgaaaccaag
gccccgagagtggagaagggccctgttctaacctctcacttggatctaaagatgcagccg
gagccgtcctctgtcctcagccagctggcccagcggcagcagcaggcccagcatagctcc
ctgccccaggcagagcctctgtctcttcccccccaggtacctactcccccaggccactac
gatgccgggcccccgcctcccagagacggaccctccctggaccatcaggctcccatggct
gaacccccacagaggcagatcaagacccagagacgcagagtacctcctccctcaaagatc
ccctcatctgcggtggagatgccaggctcagcagatgtgtctggtcttaacgtgcagttt
ggggccctggactttgactcggagcccagtgtgattgacatgggccaccaggctgagcct
gccagggatctggcccccacagctgtaccccagccccaaagcagcttgttttccaaacct
ggaccagtcagtgagccccttggcagcttgtcatccatgcctccgtcgatatcagacccc
agtttcccgtctctgggtttgcccagtgccacaccatccccctccctgggtctccccagc
gccgccccaccctccacctcctcagctagcagagtggacaacggccccgtgcagcgcatg
cccccccacctgggctacccccagagcaaagacgcccccgccgcccctctcactgtgagt
caccaacactggatttgtcagaatggctatggtggcgtgaggacacagggccctgaggac
tcgatgtcgttggtttctcgaacccctaagccacaatcacctcccatgagcagtgacagt
ggccccgtccaccatgttccctccccagcctccacaccttcctactctgcccctctgcca
tctgtcagcagtcatgtgaccagtacatactcgtcaggatctgccctctccactagctcc
tcccttacgatgaccagcgaggagagcagtagtctccacgccttctcttcctcatctgga
ccttccatcaatgctgcggttagcagctccaatggcatgatgcatgtccccggagcacct
ggtctatccaccaatggcaacaccaccctctcagctgccggacgcactgcccaaccccaa
cccctgctgaacaccacctctggcaaagccccccctaacttggcccaaggactgccccct
ctgctggctaatcagtacattatgggccctggaggcctgctccctgcatacccgcagatc
tatggatatgaggacctacagatgctgcagtctcgtctgcctatggactactatggagtt
gcattccctggtacaaccgcaacaatgcctggcagagatgggctagccaacaatccatac
tcaggtgaagcgaccaagtttggcagaggggactcgtcttccccagctccccccaacagc
ctgtctcaaggcccctccgctcagccccagcagcccccccaggctcagagccaaggtctg
ggacagagccagggccagcagaaccaggccttcctcaatccacctctgcccccaggctac
ggctacaccggccttccttactatgccggcatgcccggggtgcccagcgccttccagtac
ggccccaccgtttttgtgcctccggcctcggccaagcagcccaacatgggcttggggaac
ccctccagccagtaccaccaacagcatcagcctagctacggccagcacgcgtatggaaca
gcttttgacgacctgtctcagggccacgcgggggagtacagtaagggagggtacggaggc
tctgcccagtcacaggccaaatcagctggcagcggcccagggaaagctccaggtttgtcc
agctcaggcagcagtggaggggtgcccgatattggtgcttcaatgtacagcaagacacag
tcttttgataagcagggcttccatgcgggaacgccccctcccttcagcctgccgtctgcg
ctggggggcacgggccctctgaaccccgggggtgcccccggttacgccccgccacccttc
ctccacattctgcctgcccaccagcagccacactcccagttgctacaccaccacctcacc
caagacggacagggtggtccgggtcagcgcaatcagtccagcagcatgcagcagaagagc
cagggcagtaagtccagttatggaagcccttactgggccaactga

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