Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139410717
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Entry
139410717 CDS
T10872
Name
(RefSeq) nuclear receptor ROR-beta-like isoform X1
KO
K08533
RAR-related orphan receptor beta
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139410717
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ocla03310
]
139410717
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
139410717
Nuclear receptors [BR:
ocla03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
139410717
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
DUF2716
Motif
Other DBs
NCBI-GeneID:
139410717
NCBI-ProteinID:
XP_071012251
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All DBs
Position
6:complement(19190435..19223295)
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AA seq
512 aa
AA seq
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MDTFISTHIETPVFLLQLPHRTVCVRTSVYACLSPPKMKTDVVAQIEVIPCKICGDKSSG
IHYGVITCEGCKGFFRRSQQNNAAYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDA
VKFGRMSKKQRDSLYAEVQKHQQRILNERQQQTCEAEALARVYSSSLTNGLSTLNHEIGG
TYANGHVIELPKGQVNGGATGGYYHGMDSTQPSPDQSGLDLAGIKHIKQEPVYDLTPVAN
LFNYSTYQDSQLAHSNVSMGELDRIAQNIIKSHLETCQYTADELQQLAWQTHSYDDIKMY
QSKTRDVLWQQCAIQITHSIQYVVEFAKRISGFMELCQNDQILLLKSGCLEVVLVRMCRA
FNPLNNTVLFEGKYGGMQMFKALGCDDLVSAVFDFAKSLCSLQLTEEEIALFSAAVLIST
DRPWLMEPRKVQKLQEKIYFALQHIMQKNHMDEDALAKLIGRIPMLSAVCTLHTEELQAF
QQLHPETVNVLFPPLYKELFNPDPNAAITMPK
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atggacacattcattagcacacacattgaaacacctgtcttcctattgcagctgccacac
agaacggtgtgtgtacgtacatctgtttatgcgtgcttgtctccaccgaaaatgaaaacg
gatgtcgtagcccaaatcgaagttataccgtgcaaaatctgtggagacaaatcatcagga
atccactatggagtcatcacgtgtgagggctgcaaagggttcttcagacgaagtcagcag
aacaacgctgcatactcatgccctcgccagaggaactgtctgatcgacaggaccaaccga
aaccgctgccagcactgccgtttacagaagtgtcttgcactcggaatgtccagagatgcg
gtgaagtttggccgcatgtccaagaagcagcgtgacagcctgtacgccgaggtacagaag
caccagcagcggatcctgaatgagcggcagcagcagacgtgtgaggcagaggccctggcg
cgtgtctactcctccagcctgaccaacggcctcagcaccctcaaccacgagatcggaggc
acctacgccaacggccacgtcatcgagctccccaagggccaggtgaacggtggtgccacg
ggtggctactaccatggtatggactccacccagccctccccggaccagtcaggcctggac
ttggcgggcattaagcacatcaagcaggagccggtgtacgacctgacccctgtggctaac
ctgttcaactatagcacctaccaggacagtcagctggcgcacagcaatgtcagcatggga
gagctagatcgtatcgcccagaacattataaagtctcacctggagacctgtcaatacaca
gcagatgagctgcagcagctggcctggcaaacacactcctacgatgacatcaagatgtac
cagagcaaaacgcgagacgtgctgtggcagcagtgtgccatccagatcacccattccatc
cagtatgtggtggagtttgccaagcgcatctcaggcttcatggagctttgccagaacgac
cagatcctcctgctcaagtcaggttgtctggaggtggtcctggttagaatgtgtcgggcg
tttaaccctctcaacaacacggtgctgtttgaggggaagtatgggggcatgcagatgttc
aaagcactaggctgtgacgacctggtcagcgctgtgtttgactttgccaagagtctgtgc
tctctgcagctcactgaggaggagatcgctctgttctctgcagcagtgctcatctccaca
gaccgtccatggctgatggaacccaggaaggtgcaaaagctccaggagaagatctacttt
gcgctgcagcacatcatgcagaagaaccacatggacgaggacgcgctggctaagctgatt
ggtcggatacccatgctgtcggccgtgtgtactctccacaccgaggagctgcaggccttc
cagcagcttcaccctgagacggtgaacgtgctcttccccccgctctacaaggagctgttc
aatcccgaccccaatgcagcgatcaccatgcccaagtga
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