Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139410759
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Entry
139410759 CDS
T10872
Name
(RefSeq) collagen alpha-1(XIII) chain-like
KO
K16617
collagen type XIII alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139410759
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139410759
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
139410759
NCBI-ProteinID:
XP_071012336
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Position
1:complement(66977092..67029608)
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AA seq
546 aa
AA seq
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MGIPGRLGLKGYAGEKGAPGEPGLSIIGPRGSPGQPGTRGFPGFPGPIGLDGKPGQNGLK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NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgggaattcctggaagattggggttaaaaggatacgcaggggagaagggagcgccaggg
gagccaggcctgtccatcattgggccacgaggatctcctggacagccaggaactagaggc
ttcccaggcttcccgggtccgattgggttggacggcaagcccgggcagaacggcttgaaa
ggagacttgggtcaacgtggtcccaaaggagttccaggtgaatctggtcagaaaggagaa
aagggcgtatgtggagactacagtcacaggatgttgcccatcaccgtgcgcaacatgcct
caaataaaccctctaatcctaaagcgcctcaagcagggtgagcctggagctcagggccca
ccaggacctcccggcccctcagggacccccggactgaacggtgcaagtggaccaccgggt
aaacccggtgaaccaggaaaaccaggaaaagatccaaggctcctgcccgggatgaagggt
gagccaggcatgccaggaataaagggtgatgttggccctgctggtcccgaaggccccaag
ggactgaagggagacctagggctgaggggagagccaggttttccaggcactcctggaaga
aagggtcaagctggtacccctggaacacctggtattcctggaaagaggggctacaggggt
gacaagggtgaacccagcgcagcggggacaggcatcaaaggagaaccagggacaccagga
cttccaggcctatcaggattcaagggtgacaaaggcgaccaaggtgtcaagggggaagaa
ggatctgatggcccagctggaccaagaggtcctcccggtgcagcaggggagccaggaaaa
tcagaaatcatcaacaatgaaaatgatattcggaatgtaccgttgatgggcccacctgga
ctacctggccctcaagggggccccggaacaccaggaacaaagggtgaagttggccttcca
ggcccttcaggtcttgacggagagaagggtcctcgggggaagcctggagaggcaggtcct
gttggcccagccggccctgaaggccccagaggggaggggggcctgatgggtttctccgga
accaaaggagataagggggacatgggcccatctggatcacctggtcagaagggtgagtcc
ggagataagggaggaatgtcagacatggtatacgggcctccaggtcctccaggaccccaa
ggaccagttggccctgcgggacctgaaggactgggagggccaaagggggagccaggcata
ggcatacggggagagaagggagcatctggttcgaaaggcgataaaggggacaggggtcat
cttgggcttcctggggctcatggtttagacggcaggcctggtccagtgggcctgatagga
ccagttggtgtggcagggccagcaggactgaagggagatagaggttacaagggagattca
ggagtcccaggaccaattgggcctcaaggcatccctggtttagtaggaccacaaggattc
aaagggaaccggggagagaggggcaagaaaggcaacaggggaactaaaggggataagggg
gaccaaggagcacccggattagatgccccctgtccattgggggatgatggcttaccagta
tcagggtgttggaataaataa
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