Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139410845
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Entry
139410845 CDS
T10872
Name
(RefSeq) splicing factor 3A subunit 1-like isoform X1
KO
K12825
splicing factor 3A subunit 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040
Spliceosome
Brite
Spliceosome [BR:
ocla03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
139410845
Complex B
139410845
Complex C
U2 SnRNP specific factors
139410845
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GFIT
Motif
Pfam:
PRP21_like_P
Surp
ubiquitin
Rad60-SLD
Ubiquitin_2
Motif
Other DBs
NCBI-GeneID:
139410845
NCBI-ProteinID:
XP_071012517
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Position
6:complement(24091944..24100668)
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AA seq
787 aa
AA seq
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MPPGPVQMVQLEPNNRADESTEETPATKPIVGIIYPPPEVRNIVDKTASFVARNGPEFEA
RIRQNEINNPKFNFLNPNDPYHAYYRHKVNEFKEGKGQEPSAAVPKVMQQQALQNSQQLP
QKVQAQVIHETVVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKE
QRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLLIKLKRESENPREVLDQVRYRVEW
AKFQERERKKEEEEREKERVSYAQIDWHDFVVVETVDFQPNEQGHFPPPTTPEELGARIL
TQERYDKFGESEEVEMEVESEDEEDDEREERDDGRPTQPDQDTQLQDMDEGSDDEEDGKA
PLPPDNPMPPPLPPTPDQVIIRKDYDPKASKPQPPAKTLDEYLISPITGERIQASKMQEH
MRIGLLDPRWLEQRDRGIRERQIEDEVYAPGMDIESSLKQLAERRTDIFGVEETAIGKKI
GEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVQEDESKEKIGPS
KPELYHHHQSPLISSAPLLPKPSPPMNTMARAPPSMLPPVRTTLLSAVPVIPRPPMAPVQ
MRLAPGQVLTPMPPMMHAPRINVVPMPQPPHMMAPRPPPMVVPTSFVPAPPVPQPPRPDP
QPPSHPPPRHDDEPATKKMKTEDNLIPEEDFLRIYKGSVSVKVQVPNMQDKTEWKLSGQA
LNFTVPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMNNGSVIHLALK
ERGGRKK
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgccgcctgggcctgtacaaatggttcaactggagcccaacaacagggcagatgagtca
acagaggaaaccccagcaacgaaacccatagttgggatcatctatccacctcctgaggtc
cgaaacatcgtcgacaagactgccagttttgtagccaggaatggaccagagttcgaggca
aggatccgtcagaatgagatcaacaacccaaagtttaacttcctgaaccccaacgaccca
taccatgcttactaccgccacaaagtcaatgaattcaaggagggcaagggccaggagccg
tctgcggccgtaccaaaggtcatgcagcagcaggccctgcagaactcacagcagcttcct
caaaaggtgcaggctcaagtgattcatgagacagtggtgccaaaggagcctccacctgag
tttgagttcattgctgaccctccttcaatctcagcatttgacctggatgttgtcaagctg
accgcgcagtttgttgctcgcaacgggcgccagttcctcacacagctcatgcagaaagaa
cagcgaaactaccagtttgacttcctgcgacctcaacacagcctcttcaactacttcacc
aagctggtggagcagtacactaagattctgatccctcccaagggacttctgataaagctg
aaaagagagtctgagaaccccagggaggtgctggaccaggtgaggtaccgtgttgaatgg
gcgaagttccaggagcgtgaaaggaagaaggaggaggaggagcgggagaaagaacgtgtg
tcctacgcccaaattgactggcatgactttgtagtggtggagaccgtggactttcagcct
aatgaacaaggccacttccccccacccaccacacctgaggagctgggagctcgcatcctg
acccaggagcgttatgacaagtttggagagagtgaggaggtggagatggaggttgaaagt
gaggatgaggaggacgatgagcgggaggagcgggatgatgggcgtcccacacagcctgat
caggacacacagctgcaagacatggatgagggttctgatgatgaggaagatggcaaggca
ccattgcccccagacaaccccatgccacccccactgccccctactccagaccaggtcatt
atccgcaaggactatgaccccaaagcctccaagccacagcctccagccaagactctggat
gagtacctcatctctcccatcacgggtgagaggatccaagccagtaagatgcaggagcac
atgcgcattgggctactggatccccgctggctggagcagagggaccggggcatcagagag
aggcaaatcgaggacgaggtttacgcccctggcatggacattgagagcagcctgaaacag
ttggctgagaggcgtactgatatctttggcgtggaggagacagccatcggtaagaagatt
ggagaagaggagatccagaagcctgaggagaaggtgacctgggatgggcactctggcagc
atggcacgtactcagcaagcagcacaggccaacatcaccctacaggagcagattgaggcc
attcacaaggccaagggactggtgcaggaggatgaaagcaaagagaagattggaccgagc
aagcctgagctttaccatcatcatcaatcacccctcatctcctctgccccccttctgccc
aaacccagccctccaatgaacacaatggctcgggcccctccttccatgctgccccctgta
cgcaccactctcctgtcagctgtgcctgtgattccacggccccccatggcccctgtgcag
atgcgcctggccccagggcaggttctaacacccatgcctcccatgatgcatgctccccgc
atcaacgtggtacccatgccccaaccacctcacatgatggcccccagaccaccccccatg
gtggtaccaacttcatttgtccctgcccctcctgtcccgcagcccccccgccctgaccct
cagccaccttcccacccacccccacgccatgatgatgagcctgccaccaagaagatgaag
acagaggacaaccttataccagaggaggatttcctccgcatatacaagggttcggtgtcg
gtcaaagtacaagttcccaacatgcaggacaagacggaatggaagctaagtggacaagcg
ctcaacttcactgttccactcacagatcaggtatctgttattaaagtcaaaatccatgaa
gccactggcatgccagctggaaaacaaaagctacagtatgagggaattttcatcaaagat
tccaactcgctggcctactacaacatgaacaacggttcagtcatacacctggcactgaag
gagagaggtgggagaaagaagtga
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