Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139410908
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Entry
139410908 CDS
T10872
Name
(RefSeq) PDZ and LIM domain protein 2-like
KO
K23353
PDZ and LIM domain protein 1/2/3/4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139410908
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
139410908
Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
139410908
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
DUF4749
PDZ_6
LIM
PDZ_2
Ogr_Delta
Motif
Other DBs
NCBI-GeneID:
139410908
NCBI-ProteinID:
XP_071012667
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Position
6:complement(28257798..28318431)
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AA seq
371 aa
AA seq
DB search
MALTVNLIGPSPWGFRIYGGRDFKKVITVSKVNGGSKAELAALQPGDVILEINGENTVDM
LNVEAQNKIKNSKTQLQMLVERPEPPIPEQTNGTTTPEQLTGRFQEAVLVSRDENQNYRG
YSISSPASLSPGLYSPEAPSSPEGKRERLTSTGTKSIQLRSWSPEEKTSSHRLSRPLSQE
FSSPDFRNNSVTSRTPTPPGHYSPHSPIERELSVSPRRSSGSDFAMQRFDRDSEVYKMIQ
ENKESRTAPRQSNTFRMLQEVLESDEKEATVRFPGLSPKPTPPKPTSPGGGVPKYHTCEK
CGTSIVTQAVRIMDDRFRHPECYTCSTPECGLNLKMRGHFWVGEEMFCEKHARENYQGLG
TAPCATVSPRY
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgacagtaaacctgattggtccgtctccatggggctttagaatatacggagga
agagacttcaagaaggtgataacagtttccaaggtcaatgggggcagcaaggccgagttg
gccgccctgcagcctggtgatgtcatcctggagatcaatggagagaacacagtggacatg
ctcaatgtggaggcccagaacaagatcaaaaactccaaaactcagctgcagatgctggtg
gagaggcctgagccccccatccctgaacagaccaatggaaccaccaccccagaacagctc
actggacgcttccaggaggcggtgctggtgagtcgagatgagaaccagaactacagaggg
tactccatctccagcccagcctctctgtcacctggactctactccccagaggccccgtcc
agtcctgagggaaagagagagaggctcacatccaccggcaccaagagcatccagctgcgt
tcgtggtctccagaagagaagacatcgagtcacagactgtccagaccactgtcacaggag
ttctcttctccggacttcaggaataactctgtgaccagccgaacccccacccctccagga
cattactcgccccacagccctatagagcgcgagctgtctgtctcccccagacgcagttct
ggctcggactttgccatgcagcggtttgaccgggattcagaggtctacaagatgatccag
gagaacaaggagtctcgcacggcccctcgacagtccaacaccttccgcatgctgcaggag
gttctggagtctgatgagaaggaggcaactgtgcggttcccaggactctcgcccaaaccc
acccctcccaaacccacatcacccgggggcggagtccccaagtaccacacctgtgagaag
tgtggcaccagcattgttacacaggcggtgcgcatcatggacgaccgcttccgccaccca
gagtgctacacctgttctacaccagagtgcggactcaacctgaagatgcgaggtcacttc
tgggtgggagaggagatgttctgtgagaagcatgcccgcgagaattaccagggccttggc
actgccccctgtgccaccgtctcaccccgctactga
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