Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139410931
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Entry
139410931 CDS
T10872
Name
(RefSeq) general transcription factor IIH subunit 3
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03022
Basal transcription factors
ocla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
139410931
09124 Replication and repair
03420 Nucleotide excision repair
139410931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocla03021
]
139410931
03400 DNA repair and recombination proteins [BR:
ocla03400
]
139410931
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
139410931
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
139410931
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
139410931
NCBI-ProteinID:
XP_071012704
LinkDB
All DBs
Position
6:29778171..29782291
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AA seq
303 aa
AA seq
DB search
MVMASEDEVSLLVIVVDVNPIWWGQQANREPQFTLSKCLDAVMVMGNSHLVMTRTNKLAI
IASHCQESHFLYPCKLWKSGDGHGDDNASTSGDGKYELLSVANDFIAEEIKNLMSRTEVK
GNQTDTLLAGSLAKALCYIHRVAKELEAGQEMKSRILVVKAAEDCALQYMNFMNVIFAAQ
KQSILIDACVLDSDSGLLQQACDITGGLYLKIPQKIALAQYLLWVFLPDSDQRSQLVLPP
PVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKIPLPQVVKSKKKKLK
PST
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atggtgatggcgtcggaggatgaagtcagtcttctggtcattgttgtggatgtcaatccc
atatggtggggtcagcaagctaatcgagaacctcagttcaccttgtccaagtgtctggat
gcagtcatggtgatgggtaactcccacctggtcatgactaggaccaacaagctggccata
attgccagccattgtcaggaaagtcattttctgtatccttgtaagctctggaaatctgga
gatggtcacggggatgacaatgcatcaacaagtggggatggcaagtatgagctattgtca
gttgccaatgacttcattgcagaagagatcaagaatctcatgtcaagaactgaagtgaag
ggaaaccagacagacacactattggcgggatcacttgctaaagctctctgctatatccat
agagtcgcaaaggagctggaagccggacaagaaatgaagtcaaggatattggtcgttaaa
gccgcagaagactgtgccttgcaatacatgaacttcatgaatgtgatcttcgctgcccag
aagcagagtatcctaatagacgcctgtgtgttggactcggactcaggtctcctccaacag
gcctgtgacataactggaggattgtacttgaagataccacagaagattgccttggcacaa
tatcttctgtgggtattcctgccagactccgaccaacgctcccaactggtgctgccacct
cctgtacatgtggattacagagcagcatgcttttgccacagaaacctcattgagattggt
tatgtctgctcagtgtgtttgtcaatattctgcaacttcagtcccatctgcacaacgtgc
gaaactgccttcaaaattccattgccccaggtggtgaagtcaaagaagaagaaactcaag
ccatcaacgtga
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