Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139410937
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Entry
139410937 CDS
T10872
Name
(RefSeq) vacuolar protein sorting-associated protein 33A-like
KO
K20182
vacuolar protein sorting-associated protein 33A
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04140
Autophagy - animal
ocla04148
Efferocytosis
ocla05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
139410937
04148 Efferocytosis
139410937
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
139410937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139410937
Membrane trafficking [BR:
ocla04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
139410937
Hops complex
139410937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec1
Takusan
HexPS-like
Motif
Other DBs
NCBI-GeneID:
139410937
NCBI-ProteinID:
XP_071012720
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All DBs
Position
6:29756233..29766870
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AA seq
601 aa
AA seq
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MSAHLSYGRVNLNILREAARKELREFLDKCGGSKAIVWDEYLTGPFGLIAQYSLLKEHEV
EKMFTLKGGRLPAADVKNIIFFVRPRLELMDIIAENVISEDKMHSPRDFHMLFVPRRSML
CEQRLKEQGVLGSFINIDEYILDLIPYDGDLLSMESEGAFRECYLESDQTSLYHTAKGLM
TLQALYGTIPQIFGKGECARHVANMMLRMKREFAGSQTQILPVFDSLLLLDRNVDLLTPL
ATQLTYEGLIDEVYGITNGYVKLPPEKFSAQKKQGEAGKDLPTEPKKMQLNSAEELYAEI
RDKNFNGVGAALSKKAKIISAAFEERHSAKTVGEIKQFVSQLPHMQAARSSLANHTSIAE
LIKDITTSEAFFDNLTVEQEFMTGVDTDKVNTYIEDCIAQKDPLIKILRLVCMQSVCNNG
LKQKLLDYYKREILQTYGYEHMLTLNNLEKTGLLKPQTSTRNNYPTIRKTLKLWMEDANE
QNPNDISYVYSGYAPLSIRLTQVLARPGWRSIEEVLKMLPGPHFEERQQLPAGLHKKRQQ
GENRTTLVFFLGGVTYAEIAALRFLSQMEDGGTEYIIATTKLINGTSWIKSLMDRPEAQA
S
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgcacttatcatatggaagagtaaatttaaacattttgagggaagcagcgcgg
aaggagctccgtgagtttttggacaaatgtggaggaagcaaggctattgtgtgggatgaa
tacctgactggaccctttggattgatagcacaatattcattgttgaaggaacatgaggtg
gagaagatgttcaccctcaaaggggggcgtctccctgctgctgacgtgaaaaatataatc
ttctttgtccgtcccaggcttgagctgatggatattatagctgaaaatgtaatcagtgag
gataagatgcattccccacgtgatttccacatgttgtttgtgccacggcggagcatgctc
tgtgagcagcggctgaaagagcagggggtcctgggctcgtttatcaacatagacgagtac
atcctagacctcatcccctatgatggagacctgctctccatggagtctgagggggcattc
agggagtgctatctggaaagtgaccagacaagtctgtaccacactgccaagggccttatg
actctccaggctctgtatgggaccatcccccagatatttgggaaaggggagtgtgcacgg
catgtagctaacatgatgcttaggatgaaaagggagtttgctggcagccagactcagatc
ctacctgtgtttgactcactgctgctgctggaccgcaatgtagacctgctcacccctttg
gccacacagctcacatacgagggcctcattgacgaagtctatggaattaccaacggttat
gtgaagttgcctcctgagaagttttctgcccaaaagaagcagggtgaggcgggtaaagac
ctgcccacagagcccaagaagatgcagctcaactcagcagaggagctatatgctgagata
cgggacaaaaacttcaatggcgtaggggctgcactgagcaagaaggccaagatcatctcc
gctgcatttgaggagcggcacagtgccaaaacagtgggcgagataaagcagtttgtgtcc
cagctgccccacatgcaggcagcacggagctcactggccaatcacacctccatagctgag
ctcatcaaggacatcaccacgtctgaggccttctttgataacctgacagtggagcaggag
tttatgactggagtcgatacagacaaggttaacacatacatagaggactgcatcgcccag
aaggatcccctaatcaaaatcctgcggctggtctgtatgcagtcggtctgcaacaatggc
ctcaagcagaagttgttggactactacaagagggagattctgcagacttatggatatgaa
cacatgcttaccctcaacaacctggagaagacgggtcttctgaagccccagacaagcacc
aggaataactaccccaccatcaggaagacactcaaactctggatggaggatgccaatgaa
cagaacccaaacgacatctcctatgtgtacagtggctatgctcctcttagcatccgtctg
acccaggtgttggccaggcccggctggcgcagcatcgaggaggttctgaagatgctccct
ggtccacactttgaggagagacaacagctgcctgctggtctccataagaaacgccagcag
ggggagaacaggaccacactggtgttctttctgggaggggtgacgtacgcggaaatcgct
gccctgcgcttcctgtctcagatggaggatggtggcacagaatacatcattgccaccacc
aagctcatcaatggtacgagctggatcaaatccctaatggaccgccctgaggctcaggcc
tcctga
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