Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139411082
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Entry
139411082 CDS
T10872
Name
(RefSeq) cytotoxic granule associated RNA binding protein TIA1-like
KO
K13201
nucleolysin TIA-1/TIAR
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139411082
03041 Spliceosome [BR:
ocla03041
]
139411082
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
139411082
Spliceosome [BR:
ocla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
139411082
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Calcipressin
RRM_Nup35
Flg_new_2
XOO_2897-deam
Motif
Other DBs
NCBI-GeneID:
139411082
NCBI-ProteinID:
XP_071013022
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All DBs
Position
6:complement(37158413..37174004)
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AA seq
391 aa
AA seq
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MMMMMDDEQPKTLYVGNLSRDVTEPLILQVFTQIGPCKSCKMIVDTAGNDPYCFVEFYEH
RHAAASLAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTDDVKVAFG
PFGRISDARVVKDVATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP
APKTTYETNTKHLSFDEVVNQSSPSNCTVYCGGVGTGLTEQLMRQTFSPFGQIMEIRVFP
DKGYSFVRFTSHEGAAHAIVSVNGTSIEGHMVKCYWGKETTDMMSPMQQVQQVPQNKVGF
AAQPYGQYAQWYGNAQQIGQYVPNGWQVPTYGVYGQAQAWNQQGFNHLPASAGWTGVSAL
SNGGVMEATQGLNGSMLANQAGMGATGYPTH
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatgatggacgacgaacagcccaaaaccctgtatgtagggaacttgtccagg
gatgtcactgagcccctcatcctacaggttttcacacagatcggaccctgcaagagctgt
aaaatgattgttgatactgcaggcaatgacccatactgttttgtggagttctatgagcac
aggcatgctgctgcatcactggctgccatgaatggacggaaaattatgggtaaggaggtt
aaagtcaactgggccacaacaccaagcagtcagaaaaaagacacaagcaatcatttccat
gtctttgttggagacctcagcccagaaatcaccacagatgatgtaaaagtggcctttgga
ccatttgggaggatatcggatgcgcgtgtggtcaaagatgtggcgacggggaagtctaaa
ggctatggctttgtctctttcttcaacaagtgggatgcagaaaacgccattcagcagatg
ggtggtcaatggctaggcggcagacagatcaggaccaactgggccactagaaagccccca
gctcctaaaaccacctatgaaacaaacacgaagcacctgtcctttgatgaggtagtgaac
cagtccagccccagtaactgcactgtgtactgtggaggagtcggcactggtctaacagaa
caattgatgagacagaccttctccccctttggacaaatcatggaaatccgtgtgttccca
gacaaaggatactcttttgtgcgttttacctctcacgagggagcagcccatgccattgtg
tctgtgaatgggacttcgatagagggccatatggtgaagtgttattggggtaaagagacc
acagacatgatgagtcctatgcagcaggtgcaacaagttccccagaacaaagtgggcttt
gcggcccagccctacggccagtatgcccagtggtacggcaatgcccagcaaattggccag
tacgtccccaacgggtggcaggtacccacttatggggtgtacggccaggcccaggcctgg
aaccagcagggttttaatcacttaccggccagtgctgggtggacaggtgtgagtgccctc
agtaacggtggggttatggaagctacacagggattgaatgggagtatgttagcaaaccag
gccggtatgggagccactggataccccacacactga
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