Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139411135
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Entry
139411135 CDS
T10872
Name
(RefSeq) synaptobrevin homolog YKT6-like
KO
K08516
synaptobrevin homolog YKT6
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04130
SNARE interactions in vesicular transport
ocla04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
139411135
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
139411135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139411135
Membrane trafficking [BR:
ocla04131
]
SNARE
VAMP, Ykt6, Sec22 (R)
Ykt6
139411135
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Gene cluster
GFIT
Motif
Pfam:
Longin
Synaptobrevin
SLM4
Motif
Other DBs
NCBI-GeneID:
139411135
NCBI-ProteinID:
XP_071013111
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Position
6:40042951..40049064
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AA seq
198 aa
AA seq
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MKLYSLSVLHKGATKSNLLKSAYDLSSFSFFQRSSVQEFMTFTSALIVERSAHGSRASVK
EQEYLCHVYVRNDSLSAVVIADSEYPQRVAFTLLDKVLEEFSRQVESIDWPSGNPDTINY
KALDIHLAKYQNPREADAMTKVQAELDETKIILHNTMESLLERGEKLDDLVQKSEHLGNQ
SKAFYKTARKQNSCCEVM
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgtacagcctaagcgttctccacaaaggagcgactaaatccaatctcctcaaa
tccgcatatgacctctcttccttcagtttcttccagcgctccagtgtccaagagttcatg
actttcaccagcgccttgattgtggagcgttctgcacacggcagccgagcctcagtcaaa
gaacaagagtacctgtgccatgtgtatgtgaggaatgacagtctgagtgcggtggtgata
gcagacagcgagtacccccaaagagtcgccttcacactactagacaaagtgctagaggag
ttctccaggcaagtggaaagtatagactggccatctggaaacccagacaccatcaactac
aaagccctggacatccacctggccaaataccagaaccccagagaggcagatgcaatgacc
aaagtgcaggctgagctagacgagacaaaaatcattttgcacaacaccatggagtctctg
ttggagagaggggagaagctggatgacctggtgcagaagtctgaacacctggggaaccag
tctaaagccttttataagactgcacggaagcagaactcatgctgtgaggtcatgtga
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