Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139411169
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Entry
139411169 CDS
T10872
Name
(RefSeq) ATP-binding cassette sub-family A member 2 isoform X1
KO
K05642
ATP-binding cassette, subfamily A (ABC1), member 2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla02010
ABC transporters
ocla04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
139411169
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
139411169
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ocla02000
]
139411169
Transporters [BR:
ocla02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
139411169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
Motif
Other DBs
NCBI-GeneID:
139411169
NCBI-ProteinID:
XP_071013181
LinkDB
All DBs
Position
6:complement(42177060..42266481)
Genome browser
AA seq
2546 aa
AA seq
DB search
MGFLHQLQLLLWKNVSLKRRGPWVLAFEIFIPLVLFFILLGLRQKKPAIPVKEAFYSAAP
LTSAGIIPIMQSLCPDGQRDEFGFLQYKNSTVTQLLERIREVVLQNHLFTADRPGLGQEL
ESLQQHLESLSTSAGPYPLDNNFNTSQGFTVASVLKNQSVFHQFLVRNLSLPNDTASLLL
STPVNLKEVFNLIFGLYPRTGGGSSHSSGGEKETTHTPAEKILQLEEKMLGVMQSLDGGL
IHKALRDPTKAAHRQALLKLMSQALGLAGGGAGQRYDPQGLKEVEGVLLTGAMLEMLTCG
EDGTSELSKILLVPEKQQSLLQAYHSAACGGGAGQRTERFGEMSQELREQIDTQSLIDKL
RLEQANSSAPLSQSHLGALLKDLADVEKLLRDVDLLSGLARLLPKGACAGHVPPGAPANT
TTSWSLNATTWGPNTTENPWEEGGEEGRGREKENVKEENPHSFSTFVQLWAGLQPILCGN
NRIIEPEALKQGNMSSLGFTSKEQRNLGLLVHLMTTNPKILYSPIGSQVDKVIQKANETF
AFVGNVTHYARVWLNISAQLRTYLEEGKLHHHLAWMQQLTSDLRGHPELLNGIDSDLLRG
LLEGNYTLPNTSTLLEQLDTIDNAACGWTHFMSKVSVDIFKGFPDEDSIVNYTLNQAYHD
NISVFASVIFQTNLDGSLPPHVLYKIRQNSSFTEKTNEIRRAYWRPGPNTGGKFYFLYGF
VWIQDMMERAIINTFVGHDVVEPGNYVQMFPYPCYTRDDFLFVIEHMMPLCMVISWVYSV
AMMIQHIVAEKEHRLKEVMKMMGLNNAVHWVAWFITGFVQLSISVTALTAILKYGRVLLH
SDIFIIWLFLSIYAIATIMFCFLVSVIYSKAKLASACGGIIYFLSYVPYMYVAIREEVAH
DKITAFEKCIASLMSTTAFGLGSKYFALYEVAGVGIQWRTINQSPVEGDDFNLGLSMMML
IIDASVYGVLTWYIEAVHPGMYGLPRPWYFPLQKSYWLGSGRVETWECPWGGGARLSVME
EDQACAMEHRRSGRAKPDLGLEEMRGIEEEPSHLPLVVCIDKLTKVYKMGNKLALNKLSL
NLHENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSATIYGHDIRTDMERIRQNLGMCPQH
NVLFDKLSVEEHLWFYSKLKGMAEEDIRKEMDKMIDDLELNNKRHSLVQTLSGGMKRKLS
VAIAFVGGSRAVILDEPTAGVDPYARRAIWDLILKYKQGRTILLSTHHMDEADLLGDRIA
IISHGKLKCCGSPLFLKSTYGDGYKLTLVKKQSESGDQVTQPQPPSTVSPSSSSLSPSSS
SLSPCSETRVTQFIRQFVGSCLLLSDSNTELSYVLPSEAVKKGCFERLFQALEQNLAILA
LTSFGVMDTTLEEVFLKVSEEDQSLENSDADLKDSLGGISVGKPAAAVGVGGSGKPEPGA
PAGSSSSVERPEVELSNLVMCSRLSQSQSSLRSSSSLGSVLGDEEGLYADFYGDYCRLFD
NGRDPHSTSLREDVEEASPEPVVLEGQGSFKLEGWWLKLRQFHGLIVKRFHCAKRNTKGL
FSQILLPAFFVCVAMTVALSVPSIGDLPPLILSPSQYHNYTQPRGNFIPYANEDRPQYRS
KLSPDASPQKIANTLRLPSGVGATCVLKTPFNSTLDQLAQTLNPSANNSKTLAARYFDSM
CLDSFTQGVPLSNFVPPPPSPAPSDDPDTHFEDGLWNFTATTPTTVRETVTSPPTLPLFI
RELVRCICSMQGTGFSCPSGVGGRPPLMKVVTGDILVDITGRNVSEYLLYTSDRLRLHRY
GGLTVGNIQKSVPESFGKKTPPMVRKIAVRRSAQVLFNNKGYHSMPTYLNVLNNAILRAN
LPPGKGNPAAYGITLTNHPMNRTSASLSLDYLLQGTDVVIAIFIIVAMSFVPASFVVFLV
AEKSTKAKHLQFVSGCDPVIYWLANYIWDMLNYLVPATCCVLILFVFDLPAYTSPTNFPA
VLSLFLLYGWSITPIMYPASFCFEVPSTAYVFLIVINLFIGITATVATFLLQLFEHDKDL
KLVNSYLKSCFLIFPNYNLGHGLMEMAYNEYINEYYAKIGQFDKIKSPFEWDIVTRGLVA
MTIEGFVGFFITILCQYNFLRKPLRVPVSSQLIEDDDVDVACERRRVLRGDADNDMLKID
NLTKVYKSRKMGRILAVDRLCLGVRPGECFGLLGVNGAGKTTTFKMLTGDESTTGGEAFI
GGNSILRELLRVQQSIGYCPQFDALFEDLTAREHLELYTRLRGIPWKDEQRVVSWALEKL
ELSKYADKPAGTYSGGNKRKLSTAIALIGYPSLIFLDEPTTGMDPKARRFLWNLILDIIK
TGRSVVLTSHSMEECEALCTRLGIMVNGRFKCLGSIQHLKNRFGDGYMITVRTRISSNVK
EVVRFFNRNFPEAVLKERHHTKVQFQLKSDRISLAQVFSKMEQVVGVLGIEDYSVSQTTL
DNVFVNFAKKQSDNLEQQESSPPGGGQSPLQRLLTLLRPRPANTELSALVSEEPEELESD
NDEGLISFEEERVRGGKREEKVEERV
NT seq
7641 nt
NT seq
+upstream
nt +downstream
nt
atgggattcctccaccagctacagcttctgttgtggaagaatgtgtctttgaagaggaga
ggaccgtgggtgttggcctttgagatcttcatccctctggtcctcttcttcatcctgctg
ggcctgcgccagaagaaacctgccatccccgtcaaggaagccttctacagcgcggctccc
ctcacctcagcaggcatcattcccatcatgcagtctctgtgtcccgatggccagagggac
gagtttggcttcctacagtacaagaactccactgtcacccagttgttggagcggatccgt
gaggtggtgttacagaaccacctgttcacagcagacaggccaggactgggccaggagctg
gagtccctacagcaacacctggagagcctcagcacatcagcagggccctacccactggac
aacaatttcaacaccagccaagggttcacagtagccagtgtgttgaagaaccagtcagtg
ttccatcagttcctggtcaggaatctgtccctccccaatgacaccgccagcctgctgctc
tccactcctgtcaacctcaaagaggtattcaacctgatctttggcctgtaccccagaact
ggaggggggagtagtcacagttctggaggggaaaaagagaccacacatacccctgcagag
aagatacttcaactggaggagaagatgctgggagtcatgcaaagtctggatggtggactg
atccacaaagctttacgagacccaaccaaagcagcccatcggcaggccctactcaaactc
atgtcccaggctttaggcctagcaggaggaggggcaggccagagatacgacccccaggga
ctgaaggaggtggagggtgttctcctgactggtgccatgttggaaatgcttacctgtggg
gaggatgggactagtgagctgagcaagatcctattggttcctgagaagcagcagtccctg
ctccaggcctatcacagcgcagcatgtggtggtggggcgggacaaaggactgagcgcttt
ggagagatgagccaggagctacgagagcagatagacacacagagcctcattgacaagctg
cgtctggagcaagccaactcgtcggcccctctgtcccagtcccacctgggtgctctgctg
aaggacttggctgacgtggagaagctcctcagggatgtagacctgctgtcaggcctggct
cgcctgctccccaagggggcctgtgctggccacgtcccccctggggctccagccaacacc
accacttcctggtccctcaacgccaccacttgggggcccaacaccaccgagaacccctgg
gaggagggcggagaggaggggagaggacgagagaaagagaatgtgaaagaagagaaccct
cactcgttttctacctttgtgcagctgtgggcagggctgcagcctattctgtgtgggaac
aacagaatcattgagccagaggctttaaagcaagggaatatgagctctctgggctttacc
agtaaagagcagcgcaatctgggcttactagtgcatctgatgactacaaatcccaagatc
ctctactcccccatcggctcacaggtggacaaagtcattcagaaggccaatgagacattt
gcgtttgtggggaacgtgactcactacgcccgggtgtggctcaacatctctgcccagctc
aggacttatctggaggagggcaagctgcaccaccacctggcctggatgcagcagttgacc
tctgacctacgtggtcacccggaactgctgaatgggatagacagtgatctgctgcgtggg
ttgctggagggcaactacaccctgcccaacacctccaccctgctggagcagctggacacc
attgacaacgccgcctgtggctggacacacttcatgtccaaggtcagtgtggatatcttc
aagggttttccggatgaggacagcatcgtcaactacacactgaaccaagcctaccatgat
aacatctcagtgtttgccagtgtgatattccagaccaacctagatggctccctgcctcct
catgtcctctataagatcaggcagaactccagcttcacagagaaaaccaacgagatccgc
cgggcctactggcgcccagggcccaacacggggggaaagttctatttcctctacggcttt
gtgtggatccaggatatgatggagagagccatcattaacacgtttgtgggccatgacgtg
gtggagcctggcaactatgttcagatgttcccttacccctgctacacaagagacgacttc
ctgtttgtgatcgagcacatgatgcctctgtgcatggtgatctcctgggtctactctgta
gccatgatgatccaacacattgtggcggagaaggagcaccggctcaaagaggtgatgaag
atgatgggcctgaacaacgcggtccactgggtggcctggttcatcactgggtttgtccag
ttgtccatctcagtgacggccctgacggccatcctgaagtacggtcgggtgctcctccac
agcgacatcttcatcatctggctcttcctctccatctacgccatcgccaccattatgttc
tgcttcctggtgtcagtgatctactccaaggccaagctggcgtcagcgtgtggtgggata
atctacttcctcagctatgtcccatacatgtacgtggccatcagggaggaggtggcccat
gacaagatcacggccttcgagaagtgtatcgcttctcttatgtcgaccacagcgttcggc
ctgggctctaagtactttgccctgtacgaggtggctggggttggtatccagtggcgcacc
atcaaccagtcacctgtagagggcgatgacttcaaccttggcctgtccatgatgatgctc
atcatcgatgctagtgtgtatggagtactcacctggtacatagaggctgtgcatccaggg
atgtatgggcttcctcggccgtggtacttccccctgcagaagtcctattggctgggcagt
gggcgtgtggagacatgggagtgtccctgggggggaggggccaggctgagtgtcatggag
gaggaccaggcgtgtgccatggaacaccggcgatctggtagggccaagcctgaccttgga
cttgaggaaatgcgtggtattgaagaggagcccagccacctgcctctggtggtttgtata
gacaagctgaccaaggtctacaagatgggcaataagctggccctcaacaagctgagcctc
aacctccacgagaaccaggtggtgtccttcctgggacacaacggagccggcaagaccacc
accatgtctattctgacaggtctgttcccgcccacctctggctcagccaccatctacggc
catgacatccgtactgacatggagcgtatcaggcagaacctgggcatgtgcccccagcac
aatgtgctctttgacaagctcagcgtggaggagcacctgtggttctactccaaactcaaa
ggcatggccgaggaggacatccgcaaggagatggacaagatgatagacgatctagagttg
aataataagcgtcacagcctggtgcagactctgtctgggggaatgaagaggaagctgtcc
gtggccatagcgtttgtgggcggctcccgggccgtcatcctggatgagcctacggcgggg
gtggacccctacgcacgcagagcaatctgggacctcatcctcaagtacaaacagggtcgc
accatcctgctgtccacccaccacatggatgaggctgacctgttaggagaccgcatagcc
atcatctcccatgggaaactcaagtgctgcggctccccactctttctcaagagcacctac
ggagacggctacaaactcaccctggtcaagaaacagagtgagagcggagaccaggtcacc
cagccccagcctccatccaccgtgtccccttcctcctcctccctgtccccctcctcctcc
tccctgtctccctgctcagagacccgggtcacccagttcattcgtcagtttgtggggtcc
tgtctgctgttgtctgactccaacactgaactatcctatgtgttgccctctgaggctgtc
aagaagggctgcttcgagaggctatttcaggcattggagcaaaatctggccatcttggct
ctgaccagcttcggggtgatggacaccactctggaggaggtcttcctcaaggtgtcggag
gaggaccagtccctggagaacagtgatgccgacttgaaggattccctaggcggtatctca
gtggggaaacctgctgctgcagtgggtgtggggggctctggaaagccagagccaggggct
cctgcggggagcagcagcagtgtggagaggccagaggtagagctctctaacctggtgatg
tgctccaggctcagccagagccaatcctccctgcgctcctcctcctccctggggtccgtg
ctgggggatgaggaagggctctacgcagacttctacggagactactgccgcctcttcgac
aacggacgagaccctcactctaccagcctgagggaggacgtggaggaggcctcccctgag
cctgtggtcctggaggggcagggcagcttcaagctggagggctggtggctgaagctacgc
cagttccacggcctcatcgtcaagaggttccactgtgccaagaggaacaccaagggcctc
ttctcacagatcctgctgcccgcattcttcgtctgcgtggccatgactgtagcgctctct
gtgccttccatcggagatctgccaccactgatcctgtccccatcccagtaccacaactac
acccagccccgtggcaacttcatcccctacgccaacgaagaccgcccacagtacaggagt
aaactgtccccggatgccagccctcagaagatcgccaacacgctgcgtctgccatcgggc
gtgggcgccacctgcgtcctcaaaacgcccttcaacagcaccctggaccagctggcacag
acgctcaaccccagcgccaacaacagcaagaccctggccgcccgctactttgactccatg
tgtctggactcctttacccagggagtgccactgtccaacttcgtaccccctcccccctcg
ccagccccctccgatgaccccgacactcactttgaggatgggctgtggaacttcactgcc
accactcctaccactgtcagggaaacggtgacgtctcctcccaccctgcccctgttcatt
cgggagctggttcgttgtatctgctccatgcaggggacgggcttctcctgccccagcggg
gtgggggggcggccgccccttatgaaggtggtcaccggggacattctggtagacattact
gggcgcaacgtgtcagagtatctcctctacacctctgacagactgcgcctgcacagatat
ggaggactcacagtaggcaacatacagaaatcagtcccagaatcctttgggaaaaagact
ccgcccatggttcgcaaaatagcagtccgccgatcagctcaggtgctgttcaataataaa
gggtaccacagcatgccaacctatctcaacgtcctcaacaatgccatcctgcgtgccaac
ctgcctccaggcaagggcaaccctgctgcatacggaatcacactgaccaaccaccccatg
aaccgtaccagtgcaagcctctctctggactacttgctccagggcactgatgtggtgata
gctatcttcatcatcgtggccatgtcctttgtaccagccagctttgtggtctttctggtg
gcagagaagtcgaccaaggccaagcacctgcagtttgtgtctggatgtgaccctgtcatc
tactggctggctaactatatatgggacatgttgaactacttggtgcctgccacatgctgt
gtccttatcctgtttgtctttgaccttcctgcgtacacatccccaaccaacttccctgcg
gtgctgtctctcttcctcctctatgggtggtctatcactcctatcatgtacccggcctcc
ttctgtttcgaggtgcccagcacggcctatgtgttcctcatcgtcatcaaccttttcata
ggcatcactgccacagtggccaccttcctgctgcagctctttgagcatgacaaggatctg
aaactggtgaacagctacctaaagtcctgtttccttatcttcccaaactacaacctgggt
cacggcctgatggaaatggcctacaacgaatacatcaatgagtactatgctaaaataggt
cagtttgacaagatcaagtctccatttgagtgggacattgtgacccgagggctggtagcc
atgacaatcgagggctttgtaggattcttcatcaccatcctgtgtcagtacaacttcctc
aggaaacccttgagagtaccagtgagcagccagctcatagaggatgatgatgtggatgtg
gcctgtgagagacggagagtactgagaggagatgctgacaacgacatgctgaagattgac
aacctcaccaaggtgtacaagtcgaggaagatgggtcgtatcttggctgttgaccggttg
tgtctgggcgtgcgtcctggggagtgttttggcctcctgggggtgaacggagcagggaag
accaccacctttaagatgctgactggtgacgagagcaccacgggaggggaggccttcata
gggggaaacagtatcctgagggagctgttgagagtgcagcagagcattggttactgccct
cagtttgatgccttgtttgaagacctgacagccagagagcacctggagctgtacacacgc
ctccgaggcatcccctggaaggacgagcagagggtggtctcatgggccctagagaaactg
gagctctccaagtatgcagacaagcccgctggcacctacagtgggggaaacaagcgcaag
ctgtctactgccatcgccctcatcggatacccctctctcatcttcctggatgaacctact
acagggatggaccctaaggcccgcagattcctctggaacctcatccttgatatcatcaag
acgggacgctctgtggtgctgacgtcacacagtatggaggaatgtgaggctctgtgcacc
agactgggcatcatggtcaacggcaggttcaaatgcctgggcagcatccagcacctcaag
aacaggtttggtgatggttacatgatcacagtgcggactagaatcagttccaatgtgaag
gaggtggtgagattcttcaacaggaatttccctgaggctgtactaaaggagcgccaccac
accaaagtccagttccagctgaagtccgacaggatctccctggcccaggtgttcagtaag
atggagcaggtggtgggggtgctggggatagaggactactctgtcagccagaccacactg
gacaatgtgttcgtgaactttgccaagaagcaaagtgacaacctggagcagcaggagagt
tccccccctggtggaggccagtcacccctgcagcgcctgctcaccctgctgaggccccgg
ccggccaatacggagctcagcgccctggtcagcgaagagccggaggaactggagagtgac
aacgatgagggcctcatcagctttgaagaggagagggtgagaggcgggaagagagaggag
aaagtggaggagagggtgtaa
DBGET
integrated database retrieval system
