KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139411295
Entry
139411295         CDS       T10872                                 
Name
(RefSeq) DNA damage-binding protein 1-like
  KO
K10610  DNA damage-binding protein 1
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03420  Nucleotide excision repair
ocla04120  Ubiquitin mediated proteolysis
Brite
Ubiquitin system [BR:ocla04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     139411295
DNA repair and recombination proteins [BR:ocla03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      139411295
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      139411295
SSDB
Other DBs
NCBI-GeneID: 139411295
NCBI-ProteinID: XP_071013512
LinkDB
Position
6:complement(54926042..54953930)
AA seq 1139 aa
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQNGESIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRENRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGAVVLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDSGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNLQTFYCGNVAHQQLIQITSGGVRLVM
QDSKALVSEWKEPLGRNISVAACNSSQVVLAVGRALYYLQILSGELKQISTVEMEHEVAC
LDITPLGEGGESPLCAVGLWTDISARVLKLPCFTALHKEMLGGEIIPRSILMTTFEGGYY
LLCALGDGALFYFGLDLTTGVLSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIYS
SNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESP
RRICYQEVSQCFGVLSSRVEMQDASGTTAAVRPSASTQALSSSVSSSKLFPSSTSPHETS
FGEEVEVHSLLVVDQHTFEVLHAHQFLQSEYALSMVSCRLGRDPAVYFIVGTAMVYPEEA
EPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELRT
ECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILD
DDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFSHGSLVLQNLGESS
TPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTERK
TEQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq 3420 nt   +upstreamnt  +downstreamnt
atgtcttataattacgtggtaacagcgcagaaaccgacggcagtcaatgcctgcatcacc
ggccactttacttctgcagaggacctgaatctgctcatagccaaaaacacacgcctggag
atctatgtggtcacagcggaagggctccggcccgtcaaagaggtgggcatgtacggcaag
attgctgtcatggagctcttcaggccaaagggcgaaagcaaggatctgctgttcattctc
acggccaaatacaacgcttgcatcctggagtacaaacagaacggggagagcatcgacatc
atcacccgcgcccacggcaacgtgcaggaccgcatcgggcgtccctcggagacaggcatc
attggcattgtagaccctgagtgccgcatgatcggcctgcggctgtacgacggcctattc
aaggtgattccgttggaccgggagaaccgagaactcaaggccttcaacatccgcctggag
gagctgcaggtcatcgacgtccacttcctgtacggctgtcaggcgcccacagtctgcttc
atctatcaggaccctcagggacggcatgtgaagacctatgaggtgtcgctgagggagaag
gagttcaacaaggggccgtggaaacaggagaacgtggaggctgaggcttctatggtcatc
ccagtcccagaaccatttggaggcgctataatcattggacaagaatccatcacctaccac
aacggggataaatacttggccattgcgcctcccaccatcaagcaaagtaccatcgtatgt
cacaaccgcgtggaccccaacggctcgcgctacctgctgggggacatggagggccgcctg
tttatgctgctgctggagaaggaggagctgatggacggggccgtggtgctcaaggacctc
cgtgtcgagctgctcggagagacgtccattgcagagtgcttgacctacctagacaacggt
gtggtgtttgttggttccagactgggcgactcccagttggtcaagctcaatgtggacagt
aacgactcagggtcgtacgtggcggtgatggagaccttcaccaacctggggcccatcgtg
gacatgtgtgtagtggacctggagagacagggacagggccagctggtcacctgttctgga
gcgtttaaggagggctccctcaggatcatccggaatggcattgggatccacgaacacgcc
agcatcgacctgccagggatcaaaggtttgtggccccttcgctcagaggctgggagagag
acagacgatatgctggtcctgtctttcgtgggccagacaagggtgctgatgctaagcggg
gaggaggtagaggagactgagttgcctggctttgtggacaacctgcagaccttctactgt
ggcaacgttgcccaccagcagctcatccagatcacgtcgggcggtgtgcgtctggtaatg
caggacagcaaggccctggtgtctgagtggaaggagccgctgggccggaacatcagcgtg
gctgcatgtaactcctcccaggtggtgctggccgtgggccgcgccctctactatctccag
atcctctctggggaactcaaacagatcagcacggtggaaatggagcatgaggtggcctgc
ctagacatcacgcccctgggggagggtggagagtcgcccctctgcgccgtgggcctgtgg
acggacatatcggcacgggtcctcaagctgccctgcttcaccgccctgcacaaggagatg
ctcggaggagaaattatcccgcgctccatcctgatgacgacgttcgagggcggctactac
ctgctgtgtgccctgggagacggagcgctcttctacttcggcctggacctgactacagga
gtgctgagcgagcgtaagaaggtgactttgggcacccagcccacggtgctgaggaccttc
cgctccctgtccacctccaacgtgtttgcctgctccgaccggcccaccgtcatctactcc
tccaaccacaagctggtcttctccaatgtcaacctcaaggaggtcaactacatgtgtccg
ctcaactccgagggctaccccgacagtctggctctggccaacaacagcactctcaccatc
gggaccatcgacgagatccagaagctccacattcgcacagttcccctctacgagtctccc
aggagaatctgttaccaggaagtgtctcagtgtttcggggtgctgtccagccgcgtggag
atgcaggacgccagtgggaccactgcagcggtgcgccccagcgcgagcactcaggctctg
tctagcagtgtgagctccagtaagctgttccccagcagcacctccccacacgagacctcc
ttcggggaggaggtggaggtgcacagcctcctggtggtcgaccaacacaccttcgaagtg
ctccacgcccaccagttcctccagagtgagtacgccctcagcatggtgtcctgccgcctg
ggcagggaccccgcggtctactttatcgttggcacagcgatggtctacccagaggaggcg
gagcccaagcaaggccgcatcatcgtcttccactacactgacggtaagctgcagacggtt
gcagagaaggaggtgaagggagccgtctactccatggtggagttcaatggcaaactactg
gccagcatcaacagcacagtgcgtctgtacgagtggaccgccgagaaggagctgaggaca
gagtgtaaccactacaacaacatcatggcactctacctaaagaccaaaggagacttcatc
ctggtgggagacctgatgaggtctgtactgctgctggcctataaacccatggagggcaac
tttgaggagatcgcccgtgacttcaatcccaactggatgagtgctgtggagatcctggac
gatgacaacttcctgggggcggagaatgccttcaacctctttgtttgtcaaaaagacagc
gcggccactacagacgaggagcgacaacacctacaggaggtgggcgtgttccacctgggg
gagtttgtcaacgtcttctcccatgggtcactggtgctgcagaacctgggcgagagctcc
acccccacgcagggctccgttctctttggcaccgtcaacggcatgatcggtcttgtgacc
tctctgtccgagggctggtatagcctgctgctggacctgcagaaccgactcaacaaggtc
atcaagagcgtgggcaagatcgagcacagcttctggaggtccttccatacagagcgtaag
actgagcaggccacgggcttcatcgacggggacctcatcgagagcttcctggacctgggc
cgcgccaagatgcaggaggtggtcagcacgctacagattgacgacggcagcggcatgaag
cgcgaggccaccgtggacgaggtcataaagattgtggaggagctgacaaggatccactag

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