Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139411366
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Entry
139411366 CDS
T10872
Name
(RefSeq) LOW QUALITY PROTEIN: cadherin-5-like
KO
K06533
cadherin 5, type 2, VE-cadherin
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04514
Cell adhesion molecules
ocla04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
139411366
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
139411366
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139411366
04090 CD molecules [BR:
ocla04090
]
139411366
Cell adhesion molecules [BR:
ocla04515
]
Cadherins
Major cadherins
139411366
CD molecules [BR:
ocla04090
]
Proteins
139411366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_CELSR2_9th
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
139411366
NCBI-ProteinID:
XP_071013746
LinkDB
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Position
6:60734761..60749736
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AA seq
766 aa
AA seq
DB search
MMRQSAWRQMRAPELWMGLFALALTLSLTMAEHMDQRPALQTSPVLHRHKREWLWNNLYV
EEERPTYFQYYLGKLKSTKSGDRTHYVIEGEGANTIFKVDEKGDIFVTERLDREVKSKYH
LSAKLVDTSNKLVEKVEDFVILVTDINDNDPVFTKSFNASIKERSKRGTKVIEVTATDAD
DPTTANGELDYKLLEGGDFFDIDSTTGIITTKYENLDRETQSSYVVVVQAQDLRGLKQGG
TATTSVSIAVSDINDNIATFTKSSYVFRVKEDMKRGQRIDTMVLEDRDEIQNKDPIFTIA
PSSDIFEMERSQIKDGNLMLKKGLDYETKSSYTFFVHVRENHLQSPADNKDNPLIKAQVT
IQVLDVDEQPEFSKSIYNFNVIEEIMVNNIGVVSARDPDQAKKAIRYSIEDKDSPIGINP
ITGQLFTVRKLDRELVANHMFQVKAKEEPNGLESFVNVNILVIDINDNKPELSIEEIFVC
ENDMAGTVIGTISATDKDDHLPAFSFTXTEPNGNFSVIDNNDNTSNIVLKHGGFSLEDSR
DYVIEIGISDGGRPPMNSITSLPIKVCRCDNKRIHTQCKAAQLKMGVSVHALIVILVCIL
TILVIVILIAMRKRHQKDALVTLGKSEIHEQLVTYDEEGGGEMDTNGYDVSILTSARNDG
SMSMRQGPSLYAMVKKPPTACKGDMAVMIEVKKDEADHDRDEIPYDTLHIYGYEGPESLA
GSLSSLDSSSTGSNLDYDFLNDWGPRFRTLAELYGVDGSEGSGSPY
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgatgagacagtctgcatggaggcagatgagggcaccagagctgtggatgggtctcttt
gccttggccctgaccctcagtctaaccatggctgaacatatggatcagaggccagcactc
caaaccagcccagttctccataggcacaagagagagtggttgtggaacaacctttacgtg
gaggaggaaaggccaacctacttccaatactatcttggaaagttaaagtcaacaaagtct
ggtgacaggacacactatgtcattgagggagaaggtgccaacacaatcttcaaagtggat
gaaaaaggagacatctttgtcactgaacgattggatcgagaggtgaaaagcaaataccat
ctaagtgcaaagctggttgataccagcaacaaattggtggagaaagtggaagactttgtg
atcctggttactgacatcaatgacaatgatccagtgtttactaaatcgttcaacgcttct
atcaaagagagatccaaaagaggaactaaagtgatagaggtcacagccactgatgcagat
gatccaacgactgcaaatggagaacttgattacaaattattagaggggggagatttcttc
gatatagacagcacaacagggatcatcaccaccaaatatgagaacctggaccgtgagacc
cagagtagctatgtggttgtggttcaagcccaggatctgagaggacttaaacaagggggc
accgccaccacctctgtcagcatcgcagtcagcgacatcaatgataacatagccacattt
accaaaagttcctatgtatttagagtgaaagaggacatgaagcggggacagagaatagac
accatggtcctggaggacagagatgagatccagaataaagaccccatcttcaccatagca
ccttcatctgacatttttgaaatggagcgcagtcagatcaaagacggcaacctcatgctg
aaaaagggactggattatgaaaccaagagcagctacacattctttgtgcatgtgagggag
aaccacttgcagtcccctgcggataataaggacaatcctttgatcaaggcccaggtgacc
atccaggtgctagatgttgatgagcagccagaattcagcaagagtatctacaattttaat
gtcatagaggaaattatggtcaataatattggagtcgtttcagccagagatcctgatcaa
gccaaaaaggccatacggtattccattgaggacaaggacagtcccattggtatcaacccc
ataactggacaacttttcacagtgaggaagctggatcgggagttagtagccaatcacatg
ttccaggttaaagctaaggaggaaccaaatggactggaatcttttgtgaacgtcaacata
ctggtcattgatatcaatgacaacaaaccagagctgtccattgaagagatattcgtgtgt
gaaaatgatatggctggaacggtgattgggaccataagtgccacagacaaagatgatcat
ttgcccgcattcagcttcaccnnaaccgaaccgaacggcaacttttcagtcatcgataac
aacgacaacacatctaacatagtgctgaaacatggaggcttcagcctggaggactccagg
gattatgtaatagaaattgggatcagcgatggaggcaggcctcccatgaacagcatcacc
tctctgcctatcaaagtgtgcaggtgtgacaacaagaggatccacacccagtgcaaagca
gcccaactcaaaatgggtgtcagtgtccacgcccttattgttatactggtgtgcatcctg
actattctggtcatagtgatcctgatcgctatgagaaaacgtcaccagaaggatgccctg
gtcactctgggtaagagtgagatccacgagcagctagtgacgtacgacgaggagggcggt
ggggagatggacaccaacggctatgacgtgtccatcctgacctcagctcggaatgacggc
agcatgagcatgaggcagggccccagcctttacgccatggtgaagaaaccgccaaccgcg
tgcaagggagacatggccgtgatgatcgaggtgaagaaagacgaggctgaccatgacagg
gatgagatcccctacgataccctgcacatctatggctacgaggggccagagtccctggct
ggtagcctcagttccctggatagttcctccactggctctaaccttgactatgacttctta
aacgactggggccctcgcttcagaaccctggctgagctctacggggtggatgggtctgag
ggaagtggctcaccgtattga
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