Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139411368
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Entry
139411368 CDS
T10872
Name
(RefSeq) LOW QUALITY PROTEIN: thrombospondin-2-like
KO
K04659
thrombospondin 2/3/4/5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04145
Phagosome
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04518
Integrin signaling
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139411368
04518 Integrin signaling
139411368
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
139411368
09144 Cellular community - eukaryotes
04510 Focal adhesion
139411368
09142 Cell motility
04820 Cytoskeleton in muscle cells
139411368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139411368
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139411368
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139411368
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Phagocytosis
Opsonins
139411368
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
139411368
Exosomal proteins of colorectal cancer cells
139411368
Exosomal proteins of bladder cancer cells
139411368
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139411368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
VWC2L_2nd
EGF_3
TSP1_ADAMTS
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
139411368
NCBI-ProteinID:
XP_071013791
LinkDB
All DBs
Position
1:91865571..91937091
Genome browser
AA seq
989 aa
AA seq
DB search
MNGSKYREILDENLLQSSQDLIQTSQNLKGSAERNGRNSPNTGHXGGVGPFDAGMTPLIA
WLMVFLCDLTAGVERPEVMCRRSCEELNDLLSELHGLHIVTTSLLHDLQRATEENEALRE
ALSELGSSLDREGGGEDDEEERVCVQDGRVYQRKEDWVSDSCTFCTCQEGKAVCRQVTCP
PVICSSPSFTEGECCPVCLGLGSEDGWSPWSEWTECSVTCGRGFQRRGRSCDDVSTSCSD
SSLQTRRCTLGSCESRVHGNGGWGLWSPWSACSVSCGSGLVVRVRLCNFPLAQRRGSGCR
GNTTETHPCDATPCPIVGVWGPWSSWLPCSVSCGSGLMIRQRECSNPAPRHGGRNCVGET
ADYAACDTQPCPIDSCLSRPCFPGVSCHSETDGSWECGPCPLGYHGNGSVCEDQDECVLQ
GVCVTECVNTDPGFHCLPCPPRYHGNQPYGLGLEDANNTKQVCEPHNPCKDNTHRCSQHA
ECVYLGVASETVYQCVCGVGFAGDGFLCTEDSDLDGWPNHILPCHHNTTYHCLQDNCPAL
PNSGQEDLDNDRLGDACDPDDDNDDVLDERDNCPGHYNPHQFDSDRDGVGDRCDNCPFTP
NPLQTDTDSNGEGDACSIDMDGDEMLNEHDNCPLLYNTEQRDTDLDGVGDQCDNCPFVHN
PTQTDSDSDLVGDHCDDNEDIDEDGHQNSLDNCRYVANSNQVDHDRDGIGDACDHDDDND
GIPDDRDNCRLVPNADQIDADNDGRGDACQDDFDNDSIPDALDVCSENSGIGVTDFRKFQ
TVLLDPRGTTQSDPLWVVRGHGTELLQTANSDPGIALGFDEFRAVDFSGTFYVNTDRDDD
YVGFVFSFQSSRRFYVVMWKQVSQAYWEKSPSRAFGNAGVSLKVVNSSSGPGEALRNALW
HTGNTIQQVRTLWHDPNNMGWKDYTAYRWHLIHRPKTGFIRIVVSEGRSILADSGPVYDR
TLAGGRLGLFVFSQEHILFSDLRYTCRDN
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgaacggatcaaagtacagagagatccttgatgaaaacctgctccagagctctcaggac
ctcatccaaaccagccagaacttgaaaggatctgcagagaggaatgggagaaactcccca
aatacaggacactgaggaggagttgggccatttgatgcagggatgacaccactgattgcc
tggctgatggtgtttctctgtgatctgacagcaggggtggagcgtcctgaggtgatgtgt
cgtcggtcctgtgaggagctgaatgatctgttatcagagctgcatggcctccacatcgtt
accactagtctgctgcacgaccttcagagagctacagaggagaatgaggcattgcgtgaa
gctctctctgagctgggcagcagtttggacagagagggaggaggagaagatgatgaagag
gagagagtgtgtgtgcaggacggacgtgtgtatcagcggaaggaggactgggtttcagac
agctgcacattctgtacctgccaggaggggaaggcagtgtgtcggcaggtcacctgtcct
ccagtaatatgttccagtccttccttcactgaaggggaatgctgccctgtgtgtctgggg
ttgggaagtgaagatggatggtccccatggtcggagtggacggaatgttcggtcacctgt
gggcgtggcttccagcggagagggcgatcttgtgatgatgtctccacgtcctgttctgac
tcctccctccaaacccgcaggtgcaccctgggaagttgtgaaagccgagtccatgggaac
ggcggctggggcctgtggtctccgtggtctgcatgttctgtgtcgtgtggttcaggtctc
gttgtgcgtgttcgactctgcaacttccccctcgctcagcgcaggggcagcggctgccgt
ggcaacactacagagacacatccctgtgacgctacaccctgtccaattgtcggggtctgg
ggaccgtggtcttcctggttaccatgcagtgtgtcgtgtggcagtgggctgatgattcgt
cagcgggagtgttctaaccccgccccccggcatggaggcaggaactgtgtgggagagacg
gccgactacgcagcctgcgatacacaaccctgtccaatagacagctgtctttctaggccc
tgcttccctggggtctcctgccactctgagactgatggctcatgggaatgtgggccctgt
ccactgggttaccatggaaatggctctgtctgtgaagaccaggatgaatgtgtgttgcag
ggtgtgtgtgtgaccgagtgtgtgaacacagacccagggttccactgtctcccctgcccc
ccccgatatcacggcaaccaaccctacggtctcggactggaagacgccaacaacaccaaa
caggtctgtgagccccacaacccctgtaaagataatacacaccgttgcagtcagcatgcg
gagtgtgtgtacctgggcgtggcgtctgaaactgtgtatcagtgtgtgtgtggcgttggc
ttcgctggggacggcttcctgtgtactgaagattctgacctagatggctggcccaatcat
atccttccctgccaccacaacacaacctaccactgtctacaggataactgccccgccctg
ccaaactccggacaggaagaccttgacaatgatcgccttggagatgcctgtgaccctgat
gacgacaacgacgatgtcttagatgagagggataactgccctggacactacaacccccat
cagtttgactctgacagagatggagttggagaccgctgtgataactgtcccttcaccccc
aaccctttacagactgatacagacagcaacggagagggagacgcctgcagtatcgacatg
gatggagacgaaatgctgaacgagcatgataactgtcccctgctgtataacactgagcag
agagatacagacctggacggagtgggggaccaatgtgataactgtcctttcgtgcacaac
cctacacagactgattcagacagtgatctggttggtgatcactgtgatgataatgaggat
atagatgaggacggtcatcagaactccctcgacaactgtcgctacgttgccaatagcaac
caggttgaccatgacagggatggcattggcgacgcctgcgaccatgatgatgacaacgat
ggtatccctgatgaccgtgacaactgccgacttgtgccgaacgctgaccaaatagacgca
gacaatgatggtcgtggtgatgcttgtcaggatgactttgataatgacagtataccagat
gcactagatgtttgctcagagaacagtggtattggagttacagacttcaggaagtttcag
acggttctgttggaccctcgggggaccactcagtctgaccctctgtgggtggttcgagga
cacggaaccgaactgctacagactgcaaactctgaccctggcatcgccttgggttttgat
gagttccgtgcggtagacttcagtgggacattctacgtgaacacagaccgtgatgatgac
tatgtagggtttgtgttctccttccagtccagcagacggttctacgttgtcatgtggaaa
caggtcagccaggcttactgggagaagagtccttccagggcatttgggaacgctggtgtc
tctctcaaagtggtcaactcaagctcaggccctggggaggccctccgcaacgccctgtgg
cacacaggaaacaccatacagcaggttcgcacactgtggcacgaccccaacaacatgggc
tggaaggactacactgcctaccgctggcacctcatccaccgacccaagaccggcttcata
aggatagtggtgtctgagggcaggtccatcctagctgactctgggccggtgtatgacaga
actctggctggagggagactcggactgtttgtcttctcacaagaacacatcctcttctct
gacctcagatacacctgtagagataactga
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