Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139411592
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Entry
139411592 CDS
T10872
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03022
Basal transcription factors
Brite
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
139411592
Coactivators
SAGA/TFTC/STAGA complex
139411592
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
139411592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139411592
NCBI-ProteinID:
XP_071014251
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Position
6:complement(73570374..73686399)
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AA seq
996 aa
AA seq
DB search
MASTSDPLEDMLFSEVDEKAVSDLVGSLESQLVGQSNPADTQSENRGAGCTFTANHHLGK
TLPAQVGTTLVQQQQGQHKAGMHQEINSKEISLEKTVTSSSLSSIPSFEEASTTSGTGVN
ATKSGLQSHGTSSITTLPAFGGVATSPLVNSISSTTTSRGSALASGQTSTDIVDHPRKRI
TASLRSASAGIQSLNGTGGAVTSRNNPPAAGTAASAANSSRTVDVTSCVNTTNFTLSNSR
ISSTQSAIPLDKGTPTIALQRLPSHIVASIAHNGNGTTVSALVKQGAIGPITCAAASQVN
HKKEGSEAKSGAPVQSKIVMSSPFGVVNSVINSVSSPSAVSNIAAATTASHVMAKPAVNV
VGQTTTVGMVRPASPAVATATQPLLRPGVPAAQRTVAPQLIVRPPQQPQTTIQLPPGFTI
PPGMVLVRTEMGQLVMVPQQALAQAQAQAQAQAQNNISPRTATPTAGATFRATTLQKGPM
APAVAVTAPQQAPVVMAPQVQAGAQAALQPALPPQTSVPVAPGASVISQEMQENVKKCKN
FLATLIKLASHNSPSPETSKNVKSLVQDLLDAKIEPEEFTNRLQSELKSSPQPYLVPFLK
KSLPALRLSLLNIQHSLIQPLPQAKATPTPTTGTSSAIMAVPAVRGRLPNSVSTTGASVG
AQGHTAALGIKQAGTAGCQVRMPMLITPLRTQGTVTKGATFQAGKSPVGFAVKGSGNQKN
KLNDPGGGSFRDDDDINDVASMAGVNLNEESARILATNSELVGTHIRSCKDEAFLHPGLL
HRRILETAKKFGVSEVPMEAVNFISHATQSRLRTVLEKVSSIAQHRMDGGKDEEWFEQSA
DVRSQLKFFEQLERIEKQRKDEQEREILLKAAKSRSRQEDPEQARLKQKAKEMQQQEMAL
VRQRDANLTALAAIGPRKKRKMDSPGATPSGAEVSGSSVGSPGAASSPSTSSQRQRQRIT
RVNLRDFIFYMEQERETAHSLLLYRALLKLSEEPIL
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcacctccgacccactggaagatatgctattttctgaggtggatgaaaaagct
gtgagcgatttagtgggctctttggagtcacaacttgttggacaaagcaaccctgcagat
actcagtcggaaaacagaggtgctgggtgtacattcactgcaaaccatcacttagggaaa
acgctaccagcccaagtgggtactacactagtacagcagcaacaaggacaacataaagct
gggatgcaccaggagataaactctaaagaaattagcttagagaaaactgttacatcttct
tcgctgagttctattccgtcctttgaggaagcttccaccacttcagggactggagtaaac
gctaccaagagcggtttgcaatcacatggaacatcatctatcacaacactacctgcattt
ggtggtgtagcaacttctccgcttgtcaacagcatcagcagcaccactaccagccgaggt
tccgctctggcttcaggtcagacatcaacagacattgtcgatcatccaagaaaacgtata
actgcatcgttacggagtgcatccgcgggaatacagagtttgaacggtaccggaggagcg
gtaacgtcaaggaataatccccctgcggcgggaactgctgcaagtgcagcaaactcaagt
cggaccgttgacgttacatcttgtgtaaatacgacgaatttcactttatctaactccaga
atttcttcaactcaatcagcgattcccctggataaggggactcctactattgcattgcaa
agactaccaagtcacattgtagcgagcatcgcacataatggaaatggcactaccgtctcg
gccttggttaaacaaggcgcgataggaccgatcacctgtgcagcagcttcgcaagtgaac
cacaaaaaagagggttctgaagcgaagtcgggcgctcccgtacagtccaaaatagtcatg
tccagtccgttcggtgttgtcaattccgtaataaactctgtttcctctccctctgctgtt
tccaacatagcagcggcgactacagcaagtcatgtcatggcaaagcctgctgtcaatgtt
gttggacaaacaacaactgttggaatggtaaggccagcgtcaccggctgtggccacagct
acacagcctctgcttcgaccgggagtcccagcggctcaaaggactgtagccccccagctg
attgtcagacccccccaacaaccacagacgaccattcaactgcctcctgggtttaccatc
ccaccgggaatggtgttggtgcgcactgagatgggtcagctggtgatggtcccacagcag
gcccttgcccaggcacaggcccaagcccaggcccaggcccagaacaacatctccccccga
actgccacccccactgcaggggccaccttcagagcaactaccctacagaagggccccatg
gcgccggctgtggcagtgacggctccccaacaggcccccgtggtaatggccccccaggtc
caggctggggcccaggctgccttacagccagccctgcccccacagaccagcgtccctgta
gccccaggagcctctgtcatctcccaggagatgcaggagaatgtgaagaagtgtaagaac
ttcttggccaccctgataaagctggcttcccacaactctccgtcacctgagacctccaaa
aatgtcaagtcactggtccaggatctactggatgctaagattgagcctgaggagttcacc
aacagactgcagtcagagctcaagtcgtctcctcagccctacctggtccccttcctcaag
aaaagcctcccggccctgcggctgtctctgctcaacattcagcattccctgatccagcct
ctgccgcaggcaaaagccacccccacccccaccacaggcaccagctctgccatcatggcc
gtcccagctgtccgcggccgcctccccaacagcgtcagcaccacgggggccagtgtcggg
gcccagggacacacagctgccctgggtatcaagcaagcgggcaccgctggttgccaggtc
aggatgcccatgttgatcacaccattaagaacacaaggcactgtcaccaagggagccaca
ttccaagcaggcaaaagtcctgtgggttttgctgttaagggctctggaaatcagaaaaac
aagctgaacgatcccggaggcggttctttcagggatgatgatgacattaacgatgtggcg
tccatggcgggggtgaacctgaatgaagagagcgctcgtatcctggctaccaactctgag
ctggtggggacacacatccgctcctgtaaagatgaggccttccttcacccgggcctgtta
cacagacgcatcctggagacagctaagaagtttggcgtgtcagaggttcctatggaggct
gtgaacttcatctcccacgctacccagtcccgactccgcactgtgctggagaaggtctcc
tccatcgcacagcacaggatggacggtggtaaagatgaggagtggtttgagcagtcggca
gacgtgcggtcgcagctaaagttctttgagcagctggagaggatagagaagcagaggaag
gatgaacaggagagagagatcctactcaaagcagctaaaagtcgctccaggcaagaggac
ccagagcaggctcggctgaaacaaaaagctaaggagatgcagcaacaggaaatggccctg
gtgaggcaacgagacgcgaacctgaccgcgctagctgccatcggacctcggaagaaacgc
aagatggactcgccaggggccacgccgtcaggggccgaggtatcaggcagctcggtgggg
tcgccgggcgccgcctcctccccctccacgtcgtcacagcggcaacgtcaacgcatcacc
cgcgtcaatctcagggacttcatcttctacatggagcaggagagagagacagcccactca
cttctgctctaccgggctctgctcaagttgtctgaagaacctattctgtga
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