Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139411604
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Entry
139411604 CDS
T10872
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase CYLD-like isoform X1
KO
K08601
ubiquitin carboxyl-terminal hydrolase CYLD [EC:
3.4.19.12
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04217
Necroptosis
ocla04622
RIG-I-like receptor signaling pathway
ocla04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
139411604
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
139411604
04625 C-type lectin receptor signaling pathway
139411604
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ocla01002
]
139411604
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139411604
Enzymes [BR:
ocla01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
139411604
Peptidases and inhibitors [BR:
ocla01002
]
Cysteine peptidases
Family C67
139411604
Ubiquitin system [BR:
ocla04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
139411604
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CYLD_phos_site
CAP_GLY
UCH
Motif
Other DBs
NCBI-GeneID:
139411604
NCBI-ProteinID:
XP_071014269
LinkDB
All DBs
Position
6:74186884..74234373
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AA seq
959 aa
AA seq
DB search
MSSALWSQEKPSGGFREDWRFYMVVKECTVEKPPQKTLRIPRGSLGQACQERNSLGRTLP
PSKGKRSLRVLDQTNVVLSLDERDVLELDEKLAELLFPITNCEERYALLCNKPRLERARD
IDCGSKVRVQLRSGDEPLPGVVRFKGSLLPDRALSGVWFGVELLEEGRGQGFTEGSYQGR
QLFRCEDECGVFVALDKLELWDDEEEELGELEVDHVILVEEEMDFHPLEINSRVLVQTRE
GPERGTIIFCDLLPGNESLGYYVGVDMDNPIGDWDGVIDGKLLCNFASLEHTRLVPICDV
MPEYSMQDQRLQKHSFTPRGSSSDKSSGQSKPKSKGLGLQCGSRSKSELYYTLNGSSVDH
PVQAKSKSTWYIDEVGEDPAKSLTDTPPDFNETTPPTRAPPSASLSNDNKFHSLPFSLSR
KMGPNGSMSHGPLSLSVQSVMGEQMPEPPSSSPPSPRPPSPPSSRGGGGVPGLEVGSLVE
VKENPPLCGVIRWVGQPPGLPEPLAGLELEEECVGCTDGTFQGTRYFSCAPKKALFVKLK
CCRPDSRFPSLHHSSNPIERCNSIAFGGYLSEVVHENTPPRTENDGLDIMVGKKKGIQGH
YNSCYLDSTLFCLFSFSSVLDTVLLRPRSKTDVEYYRETQELLRTEIVNPLRIHGYVCAT
KVMKLRRILEKVEAASGFTSEEKDPEEFLNILFHHILRVDPLLKLRSAGQKVQDCYFYQI
FMDKKDKVGVPTSQQLIEWSFINSDLKFAEAPSCLIIQMPRFGKDFKMFNKIFPSLELDI
TDLLEDTPRECRICGGLALYECRECYEDGDITAGKIKQFCEKCNTQVHLHPRRKAHRHGK
LSVPKELQEGVWRQGSFPRQRMELFAVLCIETSHYVAFVKYGHQDSAWLFFDSMADRDGG
QNGFNIPQVSPCPEVGAYLKMTPEELHALDPKSIQGQARRLLCDAYMCMYQSPTMSLYK
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgagctctgccctgtggagccaggagaagcccagtgggggcttcagggaggactggcgc
ttctacatggtggtcaaggagtgtacagtggagaagcccccccagaagaccttgaggatc
ccccggggcagcctgggacaggcctgtcaggagaggaacagcctggggcgcacgctgccc
cccagcaaaggcaagaggagcctacgtgtcctggaccagaccaacgtggtgctgagcctg
gatgagcgggacgtcctggagctggatgagaagctagctgagctgctgttccccatcacc
aactgtgaggagcgctatgccctgctgtgcaacaagcccaggctggagcgggccagagac
atcgactgtggctccaaggtgcgcgtgcagctgcgttcgggggatgaacctttgcccggg
gtagtccgatttaaaggatctctcctcccagacagggctctctccggggtctggtttgga
gtggagctgctggaggagggcagaggccagggcttcacagagggctcctaccagggccga
cagctgttccgctgtgaagatgagtgcggggtgttcgtggccctggacaagctggagctg
tgggatgacgaggaagaggagctgggagagctagaggtcgatcacgtcatcctggtggag
gaggagatggatttccatccgctggagatcaactccagggtcctggtccagaccagagag
gggccggagaggggaactatcatcttctgtgacctgctgcctgggaacgagagcctgggg
tactatgtgggagtagacatggacaatcctattggggactgggatggtgttatcgatggg
aagctgctgtgtaatttcgccagtctggaacacacccgtctagtccccatctgtgacgta
atgccagaatactccatgcaggaccagaggctgcagaagcacagttttacccccagaggc
agcagcagtgacaagtcctctggccaaagtaaaccaaagagcaaaggcttaggtcttcag
tgtgggagtagaagcaagtcagaattgtattatactttaaatggcagctctgttgaccac
ccagtccaggccaaatccaaaagcacatggtacattgatgaagtaggggaggaccctgcc
aagtccctcacagacacgccccctgacttcaatgaaaccacacctcctaccagggccccg
ccctctgcttccttgtccaatgacaacaagttccactccctgcccttcagcctgagccgt
aagatggggcccaatggcagcatgagccatggacccctctccctctccgtgcagtcagtg
atgggagagcagatgccagagcccccatcgtccagccctccctccccgaggcccccctca
ccccccagctctcgcgggggtggcggagtacctggtctggaggtggggtccctagtggag
gtgaaggagaacccgcccctgtgtggggtcatccgctgggtggggcagcccccgggacta
ccagagccactggctggcctggagctggaggaagagtgtgttggctgtacagacggcacc
tttcaaggtacccgctacttcagctgcgcgcccaagaaggccctgtttgtgaagctgaaa
tgctgccggcccgactcccgtttcccctccctacaccactcctccaaccccatagagaga
tgcaactctatcgctttcgggggttatctgagtgaggtggtgcatgagaacactcctcca
cgcactgagaatgacggtttagacatcatggtgggcaagaagaaaggtatccagggacac
tacaactcctgctacctggactccacactcttctgtctgttttccttcagctcagtcctg
gacacagttctgctgaggccgaggtccaagactgacgtagagtattaccgagagacacag
gagctgctacgcacagagatagtcaaccccctgcgcatacatggctatgtgtgtgccact
aaagtgatgaagctcagaaggatactggagaaggtagaagctgcctcagggttcacatct
gaagaaaaagatcctgaggagttcctcaatattctgttccatcacatattgagggtggac
cccttactcaagctgaggtcggcaggtcagaaggttcaggactgctacttctaccagatc
ttcatggataagaaggacaaagtgggcgtgccaaccagccagcagcttatagagtggtcc
ttcatcaacagtgacctcaagtttgctgaggctccttcctgccttatcatccaaatgcct
cgctttgggaaggacttcaagatgttcaacaagatcttcccctcactagagttagacatc
acagacttacttgaagacactcccagggagtgtcgaatctgtgggggtctggctctgtat
gaatgcagggagtgctacgaggacggtgacatcactgccgggaagataaaacagttctgt
gaaaagtgcaatacacaggttcacctccacccgaggaggaaggcccatcgccacggcaag
ttgtccgtccccaaggaactgcaagagggtgtgtggcggcagggtagcttccctcgccag
cggatggagctgttcgctgtgctctgcatagagaccagtcactacgtagcgttcgtcaag
tacggccaccaagactctgcatggctcttcttcgacagtatggccgaccgcgacggaggg
cagaatggcttcaacatcccccaggtgtctccatgtccggaggtgggggcctatctgaag
atgacccctgaggagctgcacgccctggaccccaagagcatccagggccaggcccgccgt
ctgctgtgtgatgcctacatgtgcatgtaccagagccccaccatgagcctgtacaagtag
DBGET
integrated database retrieval system
