Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139411607
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Entry
139411607 CDS
T10872
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9-like isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
139411607
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139411607
NCBI-ProteinID:
XP_071014280
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Position
6:complement(74910750..75052756)
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AA seq
3084 aa
AA seq
DB search
MTDPIMDFFDDPNLFVGGLDGLAEEGFPPGPSLMDELNLSAGFEPLQVEPMGAGKHPGMI
PTSMPSSTQQSMAYGQHMGSFPGMKAQNSLGQPFASSEGVGGGGMIAAQHTQFHGRSIGQ
APQSNALFSNSSPMWGNQDQNGNLYHSVPQQQQQLHQQQQQQLHNQQHHLRQQQPQQQHH
PCQQQLQQQQVQQLQQQHQLLNQRQQQHLHQQVVNPQSLPQQHHSFPFHEANQLPASHNQ
QLTTGGTQFHSRAVPNSGALATANVETPNASLAGTPPQQGGYQLVQGAFPGVGPEDSSMS
FSMQTCSPMAHTLSSCSVSSTTTYPPSQYSFPGQGQPGISSLSQPLSLAPVSMITTTTPL
PSSVPELSLVGAGCAFSSAPGMTQHHQPKQVPVSQAENECPFRALRCSRQTLGNYDSSEM
FGQAMSCYPSAVSQLVPDQHQPQNCGSNLEVTRPLASTTTTNGYVSLEVSLAGLQGEVEA
QGGGFEGLEAPDLLADELLPQLEAALSQHDHHDSNCSWTNGGDGERNGKGEEEEEMKEEE
RISISMDYKIQPPKNKNANGPNSHTAARVLSPPMKSSSSSSSSSSYSSSLEKRAQRRLVK
EQREQQQQQLMEEAGEDKQQKANRIIHEAIAKARERGEKNIPRVMSPESFPSGSSSAHRR
ERDRDRDRERDRGNKTRTKASKKARIVPSSKPKQKAKIGKIVIKFGGMKKKRETESSEEG
SDEERPPRRSFKDDDSTRRSNRQVKRKKYAEEGEARVSDEEVKVMVKTKKTSTAAARKEP
AQQLFVENPSEEDAAVVDKIMSSRIVKNEVATGVIVEVEEFFVKYKNYSYLHCEWAVEQQ
LEKDKRIQQKIKRFKIKQAQRAHFFADMEEDPFNPDYVEVDRVLEVSYCEDKDTGEQVVY
YLVKWCSLPYEDSTWELKGDVDQSKIEEFELLQAARPDSRRMERPPASLWKKRDQSREYR
NSNVLRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSITFLEEIWRVGIRGPFLIIA
PLSTIANWEREFRTWTHLNVIVYHGSMVSRQMLQQYEMYSRDTQGRVVRGAYKFHALITT
FEMILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGFKLMNLEHKALLTGTPLQNTVEE
LFSLLHFLEPQSFPSENTFMLEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKKLAPKEE
TIIEVELTNIQKKYYRAILEKNFSFLSKGVGQANVPNLVNTMMELRKCCNHPYLIKGAEE
KILEDFREVYSPVAFDFHLQAMVQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILE
DYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCII
FDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQSMS
GRENSVPGGGPTQQQLSKKEIEDLLRKGAYGALMDDEDEGAKFCEEDIDQILQRRTKTIT
IESEGRGSTFAKASFVASGNRTDISLDDPNFWDKWAKKAEIDMDTANGRNSLVIDTPRVR
KQTRPFSATKDELAELSEGESDNEDKPKLRRPHDRLNSYGRTECFRVEKNLLVYGWGRWK
DILLHGRFKKQLTERDVESICRALLAYCLVHYRGDDKIKSFMWDLIAPSEDGQTKELQNH
LGLSTPVPRGRKGKKMKTQSSTFDIQKAEWIRKHNPEHMLQDEGYKKHLKHHCNKVLLRV
RMLYYLKQEVMGSQSQKILDGVDSSEIKIWVPEPDSSELPALWWDNISDKCLLLGVYKHG
YEKYNTVRADPALCFLERVGRPDEKAIAAEQRANDFMDGDVDDPEYKPAPALLKDDMEDD
ASSPGDLVVSDNPGEGAPVMMEGLGGGGGGDAAYWPSSSVLTARLRRLITASQRYTKSRQ
ILHIHQTQHTTQVTPSLCPLPPTLNDTINPKMAAKIERQQRWTRREEADFYRVVSTFGVV
FDPDLGRFDWTKFRAMARLHKKTDESLQKYLWAFTAMCRRVCRLPPREGDTAVDPSLSIQ
PITEERASRTLYRVELLRQVREQVLRHPLLYERLPLCQLGSDLPVWWETGTHDRDLLIGA
TKHGVSRTDYHILRDPELCFMAAQRNYSQNKGVQQPSQTPTPLLNPQYQASRDPALAESP
VPTPAQMEREDIPGAVPKEEPLSEGEERMERGGQVEGERWSPQPAPLTPTGIEEKPDLGV
VKGENESHMVAARTKPLTPNSAARKEKKANKRSRREARRAASAASDSDSDGSSSSSSSRS
SSSSSSSSSSSSRSGSSSSSSSSCSSGSSSSSSSSSSSSVGSESEGEEGKIKVPTVAIVK
GFDEDSVASLSTTQDEMQDSHVTENGSNNSHHHPFQGGYMLAASYWPKDRVMINRLDSIC
QAVLKGKWPGARRSYEAGGAVASFYTTKLLDNAAAANNSSNLCSASASASEDPSASPQGS
KVKKHVAGEKEFSVKMNEQEGGLKLTFQKQGPGQPLKRPLELEEGPLSQQQYLTRLHELQ
SASDTSLADFTKPQAASFPQASTGLAGQMKLNGGMDGQPVVKRRRGRRKNVEGMDLLFMN
RKRGPAVPESVPPAWGGMSQAGTGLSIASGQGNPLGAQGPMDTESRVSVINLKDGTRLAG
DDAPRRRELELWLKEHPGFVADTGAFIPGVNKRQLEQFQQDGRPKQKRHRCRNPNKIDVN
SLTGEERVQIINRRNARKVGGAFAPPLKDLCRFLQENPEYGVPPEWADVVKQSGYLPESM
FDRILTGPIVPEEVSRRGRRPKSALAKAAATANQGAPSLGLNPLLANGLLSGMDLSSLQA
FQQNLQSLQSLQLTAGLMGLPTDANNLAAMFPMMLSGMAGLPNLLSMGGLLGKPPQDATG
GAEQRKRKKGSREGGVGEPSSASSKAPSSHGPSHTSDTKGERTEGQSRDGDGHIPSVHSP
SSSSATTSTTTPLSASAAQAASSHPLSLNPLLLSSMLYPGMLLTPGLNLPVSTTQPPHSD
SNSDHKPHKPTKTFKTAPSKPLSPRRTPECQEEEGLGDKKEESGEHKEENSGPEGSGKAE
SSSSSESGSSSSSSDGSSDSSDED
NT seq
9255 nt
NT seq
+upstream
nt +downstream
nt
atgacagatcccatcatggacttctttgacgaccccaacctgtttgtgggagggctggac
gggttggctgaggagggcttcccccctggaccctcgctgatggatgagctcaacctcagc
gcaggctttgagcctctacaggtggagccgatgggggcagggaaacaccccgggatgata
cccacctccatgccctcctccacccaacagagcatggcttatgggcagcatatggggagt
tttccaggcatgaaggcccagaactccttgggacagcccttcgctagctctgagggtgtg
ggtggtggagggatgatagcagcacagcatacccagttccatggacgctcaattggtcag
gcaccccaatccaacgcgttgttttccaacagcagccccatgtggggcaaccaggaccag
aacgggaacctctaccactcagtgccccagcaacaacaacaactacatcaacaacagcag
cagcaactccacaaccaacagcatcacctccgacagcaacagccacagcagcagcaccac
ccgtgtcaacaacaacttcagcaacaacaagtgcagcagttacagcagcaacaccagctt
ctgaaccagcggcagcagcagcaccttcatcaacaggtagtgaaccctcagtctctgccc
cagcagcaccacagcttccccttccacgaggccaaccaactgccagcttcccacaaccag
cagcttaccaccggggggacccagttccactccagggctgtgcctaactcaggggctctg
gccacagctaatgtggaaacccccaatgcctcgctggctggaaccccaccacagcagggt
ggctaccagctggtgcagggggcctttcctggggtagggccagaagactctagcatgtcc
ttctccatgcagacctgctcccccatggctcacaccctgtcctcctgctcagtgagctcc
accaccacctaccctccctcccagtactccttccctggccagggacagcctggcatctcc
agcctgagccagcctctctctttagccccagtgtccatgatcaccaccaccactcccctg
ccctcctcagtgcctgaactctctctcgtgggagctggatgtgcgttttcgtctgctcca
gggatgactcagcatcatcagcccaaacaggtcccagtcagccaggctgagaacgaatgt
cccttccgggctctgcgctgctccaggcagaccttagggaactacgactcatctgagatg
tttggccaggccatgagctgctaccccagtgcagtcagccagctcgttccagaccagcac
cagccccagaactgtggatctaacttggaagttaccagacctctggccagcaccactacc
actaacggctacgtgtctctagaggttagcctggcagggctgcaaggggaggtggaggcc
caaggagggggctttgagggcctggaggctccggacctgctggctgatgagctgctgcct
cagctggaggctgccctcagtcagcacgatcaccatgactccaactgttcctggaccaat
ggtggggatggagagaggaatggaaagggagaggaagaagaagagatgaaggaggaagaa
aggatctccatatccatggactacaagatacagcctcccaagaacaagaatgctaatggt
cccaacagccacacagcagcgcgggtcctcagccccccaatgaagagcagctcatcctcc
tcgtcttcgtcctcctacagctcgtcgttggagaagcgggcccagcggaggctggtgaag
gagcagagggagcagcagcagcagcaactgatggaggaggctggggaggacaagcagcag
aaggctaacaggatcatccatgaggccattgctaaggcccgggagagaggagagaagaac
atccccagggttatgagtccagagagcttcccctctgggagctcctcggcccacaggaga
gagagggacagagacagagaccgggagagggaccgtggcaacaagaccaggaccaaggcc
tccaagaaagcccgcattgtgccctcgtccaagcccaaacagaaggccaagatcgggaaa
atcgtcattaaatttggagggatgaagaagaagagggagacagagtcttcagaggagggg
tctgatgaagaacgtccgcctcgaagatcctttaaagacgatgattcgacgcgtcggtcg
aaccgccaggtgaagaggaagaagtatgcagaggagggagaggccagggtgtctgatgag
gaggtgaaggtcatggttaaaaccaagaagaccagcactgctgcagcacgcaaagagcca
gcacagcagctgtttgtggaaaaccccagtgaggaggatgctgcggttgttgacaagatc
atgtcatctcgaatagtcaagaacgaggtcgctacaggagttatcgtagaagtggaggag
ttctttgtaaaatacaaaaactactcctacctccactgtgagtgggccgtagagcagcag
ctggagaaagacaagaggattcagcagaagatcaaacgtttcaagattaaacaggcacag
agagcccacttctttgcagatatggaggaggatccctttaaccctgactatgtggaggta
gacagagtactggaggtgtcctattgtgaagacaaggacacaggagagcaggtggtgtac
tacctggtgaagtggtgctctctgccctatgaagacagtacatgggaactgaagggggat
gtggaccagagtaaaatagaggagtttgagctgctgcaggcagcaaggccagactcccgc
aggatggagcgtcccccagccagcctgtggaagaagagggatcagtcgagggagtacagg
aacagtaacgtcctcagggactaccagctggagggagtcaactggctcctcttcaactgg
tacaacagacggaactgtatcctggcagatgagatgggtctggggaagaccatccagtcc
atcacgtttctggaggagatctggcgtgtgggcatcaggggccccttcctcatcatcgcc
cccctctccaccatcgccaactgggagagggagttcagaacgtggacccacctcaacgtt
attgtctaccacggctccatggtcagcaggcagatgctgcagcagtacgagatgtactcc
agagacacacagggtcgtgtggtgcggggagcctacaagttccacgccctcatcactacc
tttgagatgatcctgggcggctgtccagagctcaacgccatcgagtggcgctgcgtcatc
atagacgaggcccaccgcctcaagaacaagaactgcaagcttctagagggcttcaagctc
atgaatctggaacacaaagctctcctgacagggacccccctccagaacacggtagaggag
ctgttcagtctgctgcacttcctggagcctcaaagcttcccctcagagaataccttcatg
ctggagtttggagacctcaagactgaggagcaggtccagaagttgcaggccatcctgaag
cccatgatgctgcgtcgtctcaaggaggacgtggagaagaagctggctcctaaggaggaa
accatcattgaggtggagctgaccaacatccagaagaagtactacagagccatcctagag
aagaacttctccttcctgtctaaaggagtcggccaggccaacgtccccaacctggtcaac
accatgatggagctgaggaagtgttgtaaccacccctacctcatcaaaggtgctgaggag
aagatcttggaggacttccgagaggtgtacagccctgttgcctttgatttccacctgcag
gccatggtgcagtcggctggtaaactggtcctcatagacaagctgctgcccaagatgaag
gccgggggacacaaggtcctcatcttctcccagatggtccgctgtctggatatcctggag
gactacctcatccagagaaggtacctgtatgagcgtatcgatggcagagtgagaggtaac
ctgcgtcaggcagctatagaccgtttcagcaaaccagactcggatcgctttgtgttcctg
ctgtgtacccgggctggaggtctgggcatcaacttgactgctgctgacacctgtatcatc
tttgactcagactggaacccacagaacgacctgcaggcccaggctcgctgccataggatt
ggtcagaacaaggcggtgaaggtgtaccgtctgatcaccaggaactcttacgagcgggag
atgtttgaccgggccagcctcaaactgggcctggacaaggctgtgctgcagagcatgagt
ggcagagagaacagcgtgccgggaggagggccgacccagcagcagctgtctaaaaaggag
attgaggacctgctgaggaaaggggcgtatggagctctgatggacgatgaggatgagggg
gccaagttctgtgaggaggatatcgaccagatccttcaacgcaggaccaagaccatcacc
atcgagtctgagggacggggatctacctttgccaaggccagttttgtggcatccggaaac
cgcacagatatttctctggacgaccccaacttctgggacaagtgggccaagaaggctgag
attgacatggacactgccaatggcagaaacagcctggtaattgacactccgagggtgagg
aagcagacccgacccttcagtgccactaaggacgagctggcagagctgtcagagggggag
agtgacaacgaggacaagcccaagctccgccggccccacgaccgcctcaacagctatggc
aggacagagtgcttcagagtggagaagaacctattagtatacgggtggggtcgttggaag
gatatcctgctccatggtcgttttaagaagcagctgacagagcgtgatgtagagtctatc
tgcagagcccttctggcctactgtctggttcactaccgcggtgacgacaagatcaagagc
ttcatgtgggacctgatcgccccctccgaggacggacagaccaaggaactacagaaccac
ctgggtctgtcgaccccagtccccagaggcaggaaagggaagaagatgaagactcaatcc
agcacatttgacatccagaaggctgagtggatcaggaagcacaacccagaacacatgctg
caggacgagggatacaagaagcacctcaaacaccactgcaacaaggtgttgctgcgggtt
agaatgctctactacctgaaacaagaggtgatgggaagccagtcacagaagatactggac
ggcgtggactccagtgagatcaagatctgggttcctgagcccgacagctctgagctacca
gccctgtggtgggacaacatctctgacaagtgtctgctgttgggggtctacaagcacggt
tatgagaagtataacacagtgcgtgcagaccctgccctctgcttcctagagcgggtgggc
cggccagacgagaaggccatcgctgctgaacagagagccaatgacttcatggatggggac
gtggatgacccagaatacaagcctgccccagccttgctgaaggacgatatggaggatgac
gcctcctctcctggagatctggttgtctcagacaaccctggagagggtgctccagtgatg
atggaggggttaggtggtggaggaggaggagacgcagcctactggccctcctcctcagtg
ctaacagccagactgagacgtctgatcacagcctctcagcgctacaccaagtccagacag
atcctccacatccaccagacccagcacaccacccaggtcacgccctcactgtgtcccctg
ccacccaccctcaacgacactatcaaccccaagatggccgccaagatagaacgccagcag
agatggacgaggcgagaggaagctgatttttaccgtgtggtgtctacctttggtgtggtg
tttgacccagacctgggccgtttcgactggaccaagttcagagccatggctcggctgcac
aagaagacagacgagagtctgcagaagtacctgtgggccttcactgccatgtgcaggaga
gtgtgtcgcctgccacccagagaaggagacacagcagtggacccctctctgtccattcag
cccatcacagaggagcgtgcatctcgtaccctctacagagtagagctgctgcgccaggtc
agggaacaggtcctgcgccaccccttgctctatgagcgcctgcccctgtgccagctgggc
tcggacctgcccgtgtggtgggagaccggtacccacgaccgagacctcctaatcggggcc
accaagcacggcgtcagccgcacagactaccacatcctccgagacccagagctctgcttc
atggctgcccagcgcaactacagccagaataaaggagtccaacagccatcccagacccct
actccgctcctgaacccccagtaccaggctagtagagacccagccttggcagagtcccca
gtgccaaccccagcccagatggaaagggaggacatcccgggggcagtgcccaaagaagaa
cctctctcggagggggaggagcgcatggagagagggggtcaggtggagggggagaggtgg
agtccccagcctgcccctctcacccctacagggatagaagagaagcctgacctgggggtg
gtgaaaggagagaacgagagccacatggtggcggcacggaccaagccactcacacccaac
tcagccgccaggaaagagaagaaagccaataaaagaagtcgaagagaggccagacgagcc
gcctccgcagcatcagactccgactcggacggctcctcctccagctcttcatcacgatct
tcttcatcatcatcatcgtcgtcctcttcctcctcacgctccggatccagctcctcttcg
tcttcatcctgctcatcaggctcctcatcttcctcttcctcatcttcatcttcctctgtt
ggcagtgagagtgagggagaggaaggaaagatcaaggtcccgacagtggccattgtgaag
ggatttgacgaagacagtgtggcgtctctcagcaccactcaggatgagatgcaggacagt
cacgtgacagagaacggcagcaacaactcacaccaccaccccttccagggaggatacatg
ctggctgcatcctactggcccaaggaccgtgtgatgatcaaccgtctggacagtatctgc
caagcagtgctgaaggggaagtggccgggggcccggcggtcgtacgaggcaggaggggct
gtagcctccttctacaccaccaagctgctggacaatgcagctgcggccaacaacagcagc
aacctctgctcagcttccgcctcggcctcagaggacccctctgcctcccctcagggttca
aaggtgaagaagcatgttgcaggagaaaaggagttctcagtgaaaatgaatgaacaggag
gggggtctgaagctgaccttccagaagcaggggcccggccagcccctgaagaggcccctg
gagcttgaggaggggcccctgagccagcagcagtaccttacaaggctccatgagctccag
agtgcctcagacaccagtctggctgacttcaccaagccccaggctgccagcttcccacag
gcatctacaggtctggcaggtcagatgaagctgaacggaggtatggatggccagccggtg
gtgaagaggaggagaggaaggaggaagaatgtggaggggatggacctgctctttatgaac
aggaaaagaggaccagccgtgcctgaaagcgtgcccccggcgtggggtggtatgagtcag
gctggcactgggctgtctattgcctcagggcagggtaaccccctaggtgcccagggccct
atggacacagagagcagagtctctgtcatcaacctgaaagatgggacccgtctggcagga
gacgatgcccccaggaggagggagctggaactgtggctcaaagaacacccaggctttgtg
gctgacacaggggccttcatccctggagtgaataagaggcagctggagcagttccagcag
gatggtagacccaagcagaagaggcatcgctgcaggaaccccaacaagattgatgtcaac
agtctgacaggagaggagagggtccagatcatcaacaggagaaatgcacgcaaggttggt
ggggccttcgccccccctctaaaggacctgtgtcggttccttcaggagaacccagagtac
ggggttccaccagagtgggccgacgtcgtcaagcagtcgggctacctcccagagagcatg
tttgaccggatcctgacaggacccatcgtaccagaggaggtgagtcggcgtggacggagg
cccaagagcgccctggccaaggctgcagctacagccaaccagggggccccatccctgggc
ctcaaccccctgctggccaacggcctcctctctggcatggatctatctagtctacaggcc
ttccagcagaacctccaaagtctccagtcactgcagctcactgccggcctcatgggcctg
cccaccgatgctaacaacctggccgccatgtttcccatgatgctctctggcatggctggg
cttcccaacctcctgagcatggggggtctgctggggaagcccccacaggacgccacgggg
ggagctgagcagaggaagaggaagaagggaagcagagaaggaggagtaggggagccctcg
tctgcctcctccaaagccccctcctcccacggcccctcccacacctcggacaccaaaggt
gaaaggacagaaggtcaaagcagggacggagatggccacatccccagtgtccattccccc
tctagttcctctgccaccacctccaccaccaccccactaagtgcttctgctgcccaggca
gcctccagtcaccctctgtctcttaaccccttgttactctccagtatgctttacccaggg
atgcttctcactccaggccttaaccttcctgtgtccaccacacagccaccacacagtgac
tcaaacagtgaccacaaaccccacaagcccactaagacctttaagaccgccccctcaaaa
cctctgtcgccaaggagaacaccagagtgtcaggaagaggagggtcttggtgacaagaag
gaggagtcaggggaacacaaggaggagaacagtggtccagaaggctcggggaaggcggag
tcatcttcttcttcagagtctgggagctcttcttcatcatctgatgggtcatcagactcc
agcgatgaagactga
DBGET
integrated database retrieval system
