Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139411685
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Entry
139411685 CDS
T10872
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1-B isoform X1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139411685
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
139411685
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
LRR_1
Ig_3
Ig_2
LRR_9
ig
LRR_Zer-1
LRR_EndoS
LRR_LRWD1
LRRNT
Ig_C17orf99
LRR_RPS2
V-set
Motif
Other DBs
NCBI-GeneID:
139411685
NCBI-ProteinID:
XP_071014419
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Position
6:80440847..80471397
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AA seq
623 aa
AA seq
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MTVLVSSRMVSGEAGGHSYLVACWQPILVLMLGTVLSGSTTGCPSRCECNAQERSVVCHR
RRLASFPEGIPIETKLLDLSKNRLKSLGPEEFINYPQLEELQLNENNISSMEPGAFSNLV
GLRTLGLRNNQLKLIQLGVFTGLSNLTQLDISENRIVILLDYMFQELYNLKALEVGDNDL
VFISHRAFHGLSSLEQLTMERCNLTSVPTEALSHLHNLLSLRLRHLTVNAVRDYSFKRLE
RLRVLEISYWPYLDTMTSKCLYGLNITSLTITNCNLTAIPYQAIRHLGHLLFLNLSFNPI
HTVEGNKLHNLMRLQAFHLVGGRLATIEPYSFRGLNHLRVLNVSSNSLSTLEESAFHSVG
NLETLALYGNPLACDCRLLWVFRRRWRLNFNRQQPSCSLPEAVQGKEFKDFPDILPSDSF
TCQKSRIQDHKALQRHVDEGTTVHYPCQADGDPAPVIMWLSPKKQFITTKSVGRLSVSPE
GTLEVRYAQIQDNGTYLCIASNAAGNDTKPAHLHVHSYSPNWPHQPNKTFAFISNQPSED
GANGTLAQVPFPFDVKTLIIATTMGFISFLGVVLFCLVILFLWSRGKGNVKPNIEIEYVP
RKAEAGESSPTGDAPRKFNMKMM
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgacggtcctggtaagcagtagaatggtgtccggggaggcaggtgggcacagctacctg
gtggcgtgctggcagcccatcctggtcctaatgctgggcactgtcctctccggctccacc
accggctgcccgtcccgctgtgagtgtaatgctcaggaacgttccgtggtgtgccatcga
cggaggctggcctcgtttcccgagggcatccccatcgagacgaaactactggacctcagc
aagaaccgtctgaaaagcctggggcctgaggagttcatcaactacccacagctggaggag
ctgcagctcaatgagaacaatatctcttccatggagcccggggcttttagcaaccttgtc
ggcttgcggactctggggctgcgcaacaaccagcttaagctaatccagttgggagtgttc
acaggcctcagcaacctcacccagctggacattagcgagaacagaattgtcatcctgctg
gactacatgttccaggagctgtacaatctgaaggctctggaagtcggcgataacgacctg
gtgttcatctctcaccgagcgttccacggcctcagcagcctggaacagttgaccatggag
cggtgcaacctgacgtcggtgcccactgaggccctgagccatctgcacaacctgctgtcc
ctgcgactacgccacctcaccgtcaatgccgtcagggattactccttcaagaggcttgaa
cgcctgagggtgttagagatctcctactggccctacctggacaccatgacttccaaatgc
ctgtacggcctcaacatcacctccctgaccatcacaaactgtaacctcaccgccatccct
taccaggccatccgacaccttgggcaccttctctttctcaacttgtcttttaatcccatt
cacacggtggaggggaacaagctgcacaatctaatgaggcttcaggccttccacttggta
ggagggagattagccacaatcgagccctactccttccggggcttgaaccatctccgagtc
ctcaacgtatccagcaatagcctgagcaccctggaggaatccgcgtttcactccgtgggg
aacctggagaccctggcactgtacgggaacccactggcctgcgactgccgactgctctgg
gtcttccgtcgccgctggaggctcaacttcaaccggcagcagccctcctgctctttgccc
gaggccgtgcagggcaaggagttcaaagacttccctgacatcctcccctccgattccttc
acctgccagaagtccaggatacaagaccacaaggcactgcagaggcacgtagacgagggc
acaacggtccattacccatgccaggcggacggcgacccagcccccgtgatcatgtggctg
tcccccaagaagcagttcatcaccaccaagtccgtggggcgtctcagcgtgtcccccgag
ggcacgctagaggtgcgctacgcccagatccaggacaacggtacctacctgtgcatcgcc
agcaatgccgcagggaatgacaccaagcctgcccacctgcatgtgcacagctactcgccc
aactggccgcaccagcccaacaagacatttgctttcatctccaaccagcccagcgaggac
ggggccaatgggaccctggcccaggttcccttcccattcgacgtgaagactctgatcatc
gccaccaccatgggatttatctcgttcctcggcgtcgtcctcttctgtctcgtcatcctc
ttcctctggagcagaggaaaaggcaacgtcaagccaaacatagagattgagtatgtaccg
cgtaaggcggaggcaggtgagagtagtccaaccggcgatgcgccacgtaaattcaacatg
aaaatgatgtga
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