Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139411721
Help
Entry
139411721 CDS
T10872
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
139411721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF2868
Motif
Other DBs
NCBI-GeneID:
139411721
NCBI-ProteinID:
XP_071014498
LinkDB
All DBs
Position
1:71983669..72009355
Genome browser
AA seq
1654 aa
AA seq
DB search
MDDLTTRKRNHSGGSSGGKVVTETTTSTSRLVSLPPKGGSGSKSSTHRTMSSNAGGLWLE
KNILTQNSSGTNFSSSSVGVNAGGSSSSSGFYMGDYSEGGGDGGGGGGGGGGGGGGGGGG
GGGGVGSGGGGGSGYGGVYGGSPGSKVKSSSSGCSRRAQSSASPGGLSPGFLERKSMASR
SGGYDGSSSGNSSPEFTRKDYAGSGATRIGRSQSRESEIRARLQSASPSAGRWTELDDVK
RLVKGGRSNSVSPTRSSASSTLPVPRKATVEAKIVTQASQSVSGQYETTTLDSGLPSSYC
WTSSTLPISSATGNSSSAYGYHSNTNNMSPGLGSSLLNTTSPSSLSVYGFQNNLAPMSSS
VLTTSGVNAHSGTLTAGYGVQKNISNGGGLVSTGVSTSAMSALRSHTDDAYRKDLKYLVL
QKENVPVKRDTEVLTLTKDSGKHFTSSVRSVGGSLSGDSLKKEKMVSSYSETAPVLLKSE
SNSYYGSPLVSTKDKATYAEIQKEGDYYSSGGRGGGCCGCEDSCCSWWKWLLGLLLLSLL
LLGLLFGLIALAEDVRNLKSRVAALESTSTAAHASRLSASNNDIHNPQSGTYMDTGGAAR
SDNTLKLDTSLGMGMGTGTGTGIAGHTDNAALQRTIQQLLRAEMQSQSFRALLTSSMKGD
RGEPGTKGDAGNHGTKGDNGFPGLPGPPGAIGHPGHEGPKGQKGSQGDHGAEGPQGLRGR
EGPGGPRGEPGPSGFGEKGEKGSPGESGSLGPAGPVGPAGPKGSGGAPGTPGTPGQPGSQ
GFRGESGLPGPKGERGPAGFQGIKGDHGEKGPRGAAGDPGLSGLPGPAGEKGPKGSAGTP
GIDGDKGQRGDHGPTGLPGIRGPSGPAGDSGLPGTPGLQGPPGIPGNPGQPGAKGEAGEP
GRIINAGGSSSVAIPGPPGSPGAPGQAGPPGLSGPIGPAGLPGQSGPKGERGLKGEMGIQ
GLQGEAGISVKTSETVSSSRAERQFNLPAQPGPPGPPGPPGAPGRAGDSRSGLPGPAGPP
GEPGYGRPGPRGEKGESGSFVPNSGTFFSGPPGPPGPSGPKGSPGTPGPRGNQGDSGQPG
LPGSPGRPGGGSERASPYGGTHGPPGPPGTPGIPGPEGRKGEPGIPGSPGLPGSARGTVA
ASSGFPGPPGPPGPPGHPGIPGIASAPPDLRQYVNDYLRINARSMSSGLPGPRGLPGPPG
APGSSGSSSSVEDISSRVIAYLQRSGSGFGGGAQGPPGPPGLPGSSGSGSGSMSVNDLIV
MLQRDDVRRYVMGPPGPPGPAGPAARGGSTANYDPQEVATYVFRIMNERGIGGGQPGPPG
ATGPPGLPGSFSGVSDISALLQNSQFRAMVGRSAGAPGPPGTPGIPGPPGTPGTPGGPSY
RSSASGGLRIEDVQHYLQSSGYSGPPGPPGPPGPQGPPGNSHGVVSYGDSRNIGNYQRES
IRTELQAYLSSDSIRHSFIGQPGPPGSQGPRGHKGDPGEPGGVQTNRQSYAQSDPRYSSD
LERRQSDIGRLTEPLDYSNVALRVTDYIKNQGLLQDILSESHQRGGSWESQGLPGPPGPP
GPPGYSRVIGAYGNVTADLMDFFRTHGTIVGPPGNTGPKGDRGYLGPKGDRGEIGRPGPP
GLQGLHGQDGYRGEKGEKGAGEVRVGRRRRSIGV
NT seq
4965 nt
NT seq
+upstream
nt +downstream
nt
atggatgatttaacaacaagaaagagaaaccactcaggaggaagctccgggggaaaggtt
gtgacagaaactacaacctcgacaagtagattggtatctttacctccaaagggtggcagt
ggatcaaaaagtagtacccacaggactatgtctagcaatgctggaggcctgtggttggaa
aagaacattttaacccagaacagcagtggaactaacttttcctcatcttctgtgggtgtc
aatgccggaggatccagctcctcatcagggttctacatgggggactactctgagggtggt
ggagatggtggagggggaggtggtggagggggaggtggtggaggtgggggaggtggagga
ggcggcggaggtgttggcagtggaggtgggggtggctcaggctatggaggagtgtatgga
ggaagccccgggtcaaaagtaaagagcagctcgtcagggtgctccaggagggcccagagc
tctgcctcgcctgggggtctctcccctggcttcctggaaaggaagagtatggccagtcgc
tcaggaggctacgacggaagctcaagtggcaactcctcccccgagtttacacggaaagac
tatgcagggtcaggtgccactagaatagggagaagccagagcagagagagtgaaatcaga
gccagactgcagagtgcctctcccagtgctggcagatggactgagctggatgatgtgaag
aggctggtgaagggaggacgctccaacagtgtcagccccacccgctcctccgcttcctcc
accctgcctgtccccaggaaggccaccgtcgaggccaagatcgtcacccaggcctcccag
tcagtctctgggcagtatgagaccactaccctggactctggcctaccttcttcctactgc
tggactagctctacgctgcccatctcctctgccactggcaacagcagcagcgcatacggt
taccatagtaacacaaacaacatgtctccaggcttggggtcctccctgctcaacaccacc
tcaccctcctccttgtcagtgtatggattccagaataacttggcgcccatgtccagtagt
gtcctcaccaccagtggagttaacgcacattcaggcactttgacagcaggatatggagtg
cagaagaacatatcgaatggtggtggtctcgtcagcaccggagtgtcaacctctgcaatg
tccgctttgaggtctcacactgatgacgcatacaggaaagacttaaagtaccttgtgctg
cagaaagagaatgttccagtcaagagagatactgaggtgctcaccctcacaaaagacagt
ggaaaacacttcactagcagtgttcgcagtgttgggggttcactgtctggtgattctcta
aagaaggagaagatggtgtccagctacagtgagactgcaccagtccttctgaagtctgag
tccaattcatactatggatcacccctagtgtcaacaaaagacaaagcaacatatgcagag
atccaaaaagagggggactactacagcagtggaggacgaggtgggggctgctgtgggtgt
gaggactcctgctgttcctggtggaagtggctgctaggactgctcctgctctccctgctg
ctcctgggcctgctctttgggctcattgccctggcggaggacgtgaggaatctgaagtct
cgagtggcagctctggagtccacctccaccgctgctcacgccagccgcctgtcagcctcc
aataacgacatccacaacccccagtctggcacctacatggacactgggggcgcggcccgc
tccgacaacaccctgaagctggataccagcctgggcatggggatgggcactggcacgggc
actggcatcgccgggcacacagacaatgctgccctccagaggaccatccagcaactactg
agagctgagatgcagtctcagtcattcagagcccttcttacctcttcaatgaaaggggac
agaggagagccgggaactaaaggcgatgcagggaatcatggaactaaaggtgacaatggt
ttcccaggactgccaggtcctccaggtgccattggtcacccaggacacgaaggacccaaa
ggacaaaaaggaagtcaaggtgaccatggagctgaggggccacaagggctcaggggccga
gaggggcctggagggcccagaggggagccaggaccctcagggtttggagagaagggggag
aaaggttctcctggtgaatcaggatctcttggtcctgctggtccagtcggcccggctggg
cccaaaggctcagggggtgctccgggtactcctggtacgccaggccaaccaggatctcaa
ggcttccgtggagaatcaggactacctggtccgaagggggagaggggtcctgctggattt
cagggaatcaaaggtgatcatggtgagaaaggacctcgtggtgccgcaggtgacccagga
ctatcaggcttgccaggaccagccggagagaaaggacccaaaggatctgcaggaactcct
ggaattgatggtgacaaaggccaaagaggtgatcacggtcctactgggttaccagggatc
agaggtccatctgggcctgcaggggactcaggcctaccaggaacacccgggcttcaaggg
ccaccaggaataccagggaatcctggacaaccaggagccaagggtgaggcaggagaacca
ggaagaatcatcaatgcagggggatccagttctgtggccatccccggccccccaggaagc
cccggagcacccggtcaagccggacccccagggttatcaggccccattggccctgctggt
cttcctggccagtctggtcctaaaggtgagagagggctgaagggtgagatgggtattcag
ggactccagggagaggcaggtatctcagtgaaaaccagtgaaaccgtcagctcatccaga
gctgagagacagttcaatcttcctgcacaaccaggtccccctggtccccctggaccccct
ggagcccctggacgtgcaggtgactcaagatcaggactcccaggaccagctggtccccca
ggagagccaggatatggcagacctggtcctagaggagagaaaggagagtcaggaagcttt
gtacccaattcaggaacattcttctctggaccccctggaccacccgggccatctgggcca
aaaggatcacctggtacacccggaccaagaggaaaccaaggagattcaggccagcctggt
ctaccagggagcccaggaagaccaggaggaggctctgaaagagcatcaccatacggtgga
acacatgggccacctgggcccccagggactccagggattcctggaccagagggacggaaa
ggcgaacctggaattcccggttctcctggtcttcctggctctgcaagaggcactgtggcg
gccagctcagggttcccaggtcctcctggtccaccgggtcctcccggacacccaggcatt
ccaggcatagcctctgctcctcctgatctgcgtcagtatgtcaacgactatctccgaatt
aatgctaggagtatgtcttctggtcttcctggcccccgtggcctccctggacccccagga
gcccctggatcctctggatcctctagttctgtggaggacatatcttctcgtgttattgct
tatctgcagcgttcaggatcaggcttcggcggtggtgctcagggtcctccaggcccccca
ggacttcctgggtcctctggctctggttctggctcaatgtctgtcaacgacctcattgtt
atgctacagagggatgacgtacggcgatatgtaatgggcccacccggacctccaggccca
gcaggaccagcagccagaggaggcagtacggcaaactacgacccacaggaagtggctacc
tacgtcttcagaatcatgaacgaacgcgggatcggtggtgggcagcctggacctccgggt
gcaaccgggcctccagggctacctggctccttcagcggtgttagtgacatctccgcactc
ctgcaaaattcacaattccgtgcgatggttgggcgctctgctggagcccctggtcctcct
ggtactccaggtatcccgggacccccaggcacccctggtaccccaggagggccatcttac
aggagctcagcctcagggggtttaaggatagaggacgtccagcattacctacaaagttct
gggtacagtggtcctccaggcccacccggccccccaggacctcaggggcccccagggaac
tctcacggagtagtctcctatggagatagtagaaacatcggaaactaccagcgagaaagc
atccgcacagaactccaggcgtacctcagcagtgacagtatacggcactccttcattggc
caaccaggtcctcctgggtctcagggtccccgtggtcacaaaggagaccctggagaacct
ggtggggttcagactaaccgtcagagttatgcccagagtgacccacgttactcttctgac
cttgagcggcgccagagtgacattgggagattgacagagccactagactactccaacgtt
gccttgagagtgacagactacatcaagaaccagggcttactgcaggacatcctgtctgag
agtcaccagcgaggaggctcctgggagtcccaaggcctcccaggaccccctgggcctcct
ggacctcccgggtatagccgtgtcattggagcttacggcaacgtgactgctgacctcatg
gacttctttagaacccacggcaccattgttggccccccagggaatactggcccgaaagga
gacagggggtacctcggacccaaaggagacagaggcgagataggtcgcccaggccctcca
ggactgcagggactacatggtcaggatggatacagaggagagaagggagagaaaggtgca
ggtgaagttagggttggtcgtcggcgtcggagcatcggtgtttaa
DBGET
integrated database retrieval system
