Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139411725
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Entry
139411725 CDS
T10872
Name
(RefSeq) integrin alpha-11-like
KO
K06587
integrin alpha 11
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04810
Regulation of actin cytoskeleton
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139411725
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139411725
09142 Cell motility
04820 Cytoskeleton in muscle cells
139411725
04810 Regulation of actin cytoskeleton
139411725
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139411725
Cell adhesion molecules [BR:
ocla04515
]
Integrins
Integrin alpha subunits
139411725
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
FG-GAP
Integrin_A_Ig_1
Integrin_A_Ig_2
VWA_2
FG-GAP_3
Integrin_A_Ig_3
FG-GAP_2
VWA_CoxE
Ku_N
Motif
Other DBs
NCBI-GeneID:
139411725
NCBI-ProteinID:
XP_071014499
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All DBs
Position
6:complement(82716879..82802148)
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AA seq
1191 aa
AA seq
DB search
MEYCRAVFLWICCSLLPGLHDGFNIHTKNHRIIKGPKQAQFGYTVQQHVAGGQKWLLVGA
PYETNGHHQTGDVYKCPLGKRSNGSCSKLNLGRISLTNVAERKDKMRLGMTLTTNPKDNS
FVVCGPLWSYECGSSYYSTGICSRVNASFKFSKTIAPAFQRCETYMDIVIVLDGSNSIYP
WTEVQAFLINILQKFYIGPGQIQVGVVQYGEKVVHEFHLNDYKSVEEVVKRASNIHQRGG
EETNTALGINVARSEAFKRGARRGAKKVMIVITDGESHDSPDLQQAIEDSEKDGITRYAI
AVLGYYNRRGINPEAFLNEIKYIASDPDDKHFFKVTDESALKDIVDALGDRIFSLEGTSK
NGTAFGLQMSQAGFSSHFVEDGILVGAPGAYDWNGAVLKETRQGKVVPPKSSYSQEFPEE
LKNHGAYLGYTVTSVVSARNGRLYVAGAPRFNHTGKVIIFTLKNTGNLTILHSLKGQQIG
SYYGSEISPVDIDGDGVTDNLLVAAPMFFSGGWEKGKVYIYRVTELNRFVLEGALEIQDH
GQNARFGSSLAPVPDLNGDGFNDVVVGAPLEDDHRGAIYVFFSQRNRILRKYKQRIAALD
IASGLRYFGRSIHGSMDMNEDGLVDLAVGSLGAAVLLWSRSVVRIHANIRFEPSKINIFV
KDCDRGGKDVTCMSAIVCLNVTARTAIPPTQEVAITYNTSIGERRFNPRAIMDDPDKLLF
QNLTLLSGEETCQHIYFHVMETTDYVRPIVFTVAVALQDPDQGPALDDTWPTTFRTELPF
WNGCDEDDRCIPGLSLQSTTDLLSWRQFCGNAVHSRGAMCRRLSEGGAEGSERVMEGSRR
RMVVDVRLENRGENAYGARLNITYTPNLRFSSLIVKDNSDIKIECRSEDRQRHEKTCNVS
APFMRAKTQVSFRLEFEFSRSVFLDHVRVILEASSDGEEVTLEDNFNDIFHPLKYEADLL
FTRDSNPSGCEIKADLSLEIPGNIGPPFNFTFQIQNLGFFPVRDLQLNIEIPEMTKNGNQ
LLQISDFHIDKTDGTRCIPPQHVAQSRASPEDLSRVSRLNQSNTLPLPVQCTVNLNPYKE
VSVRIRGALRLDALHALRFKVLELVTSATVELPPSSPMFLHEERPVRHIILEIRKEGDYR
ISIWIIIGSTLGGLLLLSLLSLALWKLGFFQRQKRREEDEQETNGKVAEER
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggagtactgccgcgctgtgtttctctggatctgctgcagcctgttaccagggctccat
gatggtttcaacatccacaccaagaaccacaggatcatcaagggccccaagcaggcccag
tttggatacactgtgcagcagcacgttgccgggggacaaaagtggttattggtgggagct
ccatatgaaaccaatggtcaccaccagacaggggatgtgtacaaatgcccattgggaaaa
cggtccaatggcagctgctccaaactcaacctaggaaggatttctctgactaatgtcgcc
gagcgaaaagacaagatgaggctggggatgacgctgacaaccaaccccaaagacaacagc
tttgtggtctgtggacccctgtggtcctatgagtgtggcagctcatactacagcactggg
atatgctctcgagtcaacgccagcttcaaattctccaaaaccatagctccagccttccag
aggtgtgagacctacatggatatagtgatcgttctggatggttccaactccatctacccc
tggacggaggtgcaagcctttcttatcaacattctacagaagttctacattggaccaggc
cagatacaggttggagtggtgcagtatggggagaaggtggtgcacgagttccatctgaat
gactacaagtcggtggaggaggtggtgaagagagcaagcaacatccatcagagaggtgga
gaggaaaccaacacggcactcggcatcaacgtcgctcgctcagaagcattcaaacgagga
gcccgacgaggcgccaagaaggtgatgatcgtgatcactgacggggagtcacatgacagc
cctgaccttcaacaggccatcgaggacagcgagaaggatggcatcacccgctatgccatc
gctgtgcttggctactacaaccggcgtggaatcaacccagaggcattcctgaatgaaatc
aagtatatcgctagtgaccctgatgacaagcacttcttcaaggtgactgatgagtctgcc
ttgaaggacattgtggacgcgcttggggataggatcttcagtttggaagggaccagtaag
aacgggacagccttcggcctccagatgtctcaggctggcttctcttcacacttcgtggag
gatgggatcctggtgggggcaccgggggcctacgactggaatggagccgtcctgaaggag
acccgacaggggaaggtggttccgcccaagtcctcctactcacaggaattcccagaggaa
ctgaagaaccacggcgcctacctaggttacacagtaacatcggtggtgtcggccaggaac
ggtcggctgtacgtggcaggggcaccgcggttcaaccatactggcaaggtcatcatcttc
accctgaagaacactggtaacctcaccatcctgcactccctcaaaggacaacagatcggg
tcgtactatgggagtgagatctccccggtggatatagatggtgacggagtaacagacaac
ctactggtggcagctcccatgttcttcagtggaggctgggagaagggcaaggtgtacatc
tacagagtgactgagctgaatcgtttcgtcctggagggagcgttggagatccaggaccat
ggtcagaacgctcggttcggctcctcgctcgccccggtccctgacctgaacggggacggc
ttcaacgacgtggtggtgggggctcctctggaggatgaccacagaggagctatctacgtc
ttcttcagccaacgcaacaggattctgcggaaatacaaacagaggatagctgcgttagac
atcgctagtggcctgcgctactttggccgtagtatccatggcagtatggacatgaatgag
gatggcctggtggacttggccgtggggtccctgggggcagccgtgcttctatggtctcgc
agtgtcgtccgaattcacgccaacatcaggtttgaacccagcaagatcaacatctttgtg
aaggactgtgacaggggaggcaaggacgtgacctgcatgtcagccatagtgtgtctaaac
gtcaccgcccggacagccatacctcctacacaggaagtggctatcacttacaacacctcc
attggggagcgccgattcaaccccagagccataatggacgaccctgataaactgctgttt
caaaacctgaccctgctttctggagaggagacctgtcaacacatctacttccatgtcatg
gagaccacggactacgtgaggcccatcgtgttcactgtggcagtggcactgcaggatccc
gaccagggccctgcgctggacgacacctggcccaccaccttcaggactgagcttcccttc
tggaatggctgtgatgaggacgaccgctgtataccaggcctgtccttacagagtacaact
gacctgctgtcttggaggcagttctgtgggaatgcagtccactccaggggtgcgatgtgt
cgacgtctgtccgaaggaggggcggaggggtcagagcgagtgatggagggatcgaggagg
aggatggtggtggacgttcgtctggagaacagaggagaaaacgcctacggagcccgcctc
aacatcacctacactcctaacctacgattctctagtctcatagtcaaggacaactcggat
atcaagatagagtgtcgcagtgaggacagacagaggcacgagaagacctgcaacgtcagc
gctcccttcatgagagccaagacgcaggtatctttccgcctggagtttgagttcagccga
tcagtgttcctggaccacgtacgagtcattctagaagccagcagtgacggagaggaggtt
accttagaagacaatttcaacgacatctttcacccgctgaaatacgaggctgacctccta
tttacaagggactccaacccctctggctgtgaaatcaaagcagacctctccctggagata
ccaggaaatattggtcctccatttaacttcaccttccagattcagaacctgggcttcttt
cccgtgagggacctgcagttgaatatagaaattccagagatgaccaaaaacgggaaccag
ctgttgcagatatcggacttccatattgacaaaacagacggtacccgctgcataccccct
caacatgtggcacagagcagggcgtccccagaagacctctctcgagtctcacgcctgaac
cagtccaatactctgcctctgccggtccaatgcactgtcaacctgaacccctacaaggaa
gtcagcgtcagaatcaggggggcattgcggttggacgccttgcatgctctgaggttcaaa
gtcctggaactggtgacgagtgcaacagtagaacttccaccttcaagccccatgtttctt
catgaagaaaggcctgtcagacatataatcctggagattaggaaagaaggggattacaga
atctcaatctggattatcattgggagcacgctgggagggttgttgctgctgtccctgctc
agcctagctctatggaagcttggcttcttccagaggcagaagaggagagaagaggatgag
caggagaccaatggaaaggtggcagaggagcggtaa
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