Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139412011
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Entry
139412011 CDS
T10872
Name
(RefSeq) leucine-rich repeat LGI family member 3-like
KO
K19999
leucine-rich repeat LGI family member 3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139412011
Membrane trafficking [BR:
ocla04131
]
SNARE
SNARE associated proteins
Syntaxin-binding proteins
139412011
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EPTP
LRR_8
LRR_5
LRR_4
LRRCT
LRR_1
LRR_9
LRR_14
Motif
Other DBs
NCBI-GeneID:
139412011
NCBI-ProteinID:
XP_071014891
LinkDB
All DBs
Position
6:27273069..27284527
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AA seq
550 aa
AA seq
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MLDAGSRRVPEWLRLLAGLSLLLCLVGETGAKRVPKIPRCPVTCSCTKDSAFCVDTKAIP
KSFPPGIISLTMVNAAFTTIPEGAFSHLHLLQFLLLNSNTFTVVADDAFAGLAHLQYLFV
ENNDVQALSKHTFRGLKSLTHLSLSNNNLQFLPRELFKYLDILTDLDLRGNSFRCDCKIK
WLVDWMEKTNTSVPAIYCASPFEFQGRRIHDLTPRDFNCISADFAVYETFPFQSVSVESY
EFNNNQFVAFAQPDTGFCTLFVWDHVEMVFRMYHNITARSAVYCKPVVINNTLYMVVAQL
FGGSHIYKWEEDPQRFVKIQDIDTTRVRKPNFVETFQLDDEWYFAVADSSKAGSTSIYRW
NSNGFYSHQSLHPWHRDTHVEFLDVEGKQRLILSSASQPPVVYQWNRSLRQFAFHSQITE
TFDVQMVKHFWVRNVLYLCLTRFIGDSKILRWEGQRYVEIQTLPSRGSMAVYPFTVGPRQ
YLLLGSDFSFSRVYLWDDLTQRFQPFQELNMRAPRAFSLVSVDNKDMLLAASFKGNTLAY
QHLIVDLSAK
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgctggatgccggatcgagaagggtcccggaatggctgaggctgttggccggcctaagt
ctgcttctctgcctggtgggggagacaggggccaagagggtccccaaaatcccccgttgt
cctgtcacctgctcctgcaccaaagacagtgccttctgtgtggataccaaggctatcccc
aagagctttccccctgggatcatctctctgacaatggtgaatgcagccttcactacaatc
ccagagggagccttctcccacctgcacctgctgcagttccttcttctgaactccaatacc
ttcactgtggtggctgatgatgcctttgcaggtctggcacacctgcagtacctatttgta
gagaacaatgacgtccaagccctgtcaaagcataccttcagagggcttaaatccttgact
cacctttctctgtcaaataataacctgcagttccttccacgagaactcttcaaatatctt
gatattttgacagacttagacctgcggggtaactcgttccgctgtgactgtaaaattaag
tggctggtggactggatggagaagaccaacacctctgtccctgccatctactgtgccagc
ccatttgagttccaaggtcgcagaatccatgatctcaccccacgagacttcaactgtatc
agtgcagactttgccgtttatgagacttttcccttccagtctgtgtcagtggagtcctat
gaattcaacaacaatcagtttgtggccttcgcccagcctgatactgggttctgtacactg
tttgtatgggatcatgtggaaatggtcttccggatgtaccataatataacagctcgctcc
gctgtctactgcaagcctgtggtcataaacaacactctttacatggttgtggctcaactt
tttggaggatcccacatctacaagtgggaagaggacccacagcgatttgtgaagattcag
gacattgataccacacgtgttaggaaacccaactttgttgagaccttccagctggatgat
gagtggtactttgccgtggcagacagttccaaggcaggctctacgagcatataccgctgg
aacagcaacggtttctactcccaccaatcccttcatccctggcatcgtgacacccatgtg
gagttcctagatgtggaagggaagcagcgtctcattctctccagtgcctctcagccccca
gtggtttaccagtggaaccgcagcctgcgccagtttgcctttcattcccaaatcactgaa
actttcgacgtgcagatggtcaagcatttctgggtgcgcaacgttctctacctttgcctt
acacgcttcattggtgactccaagattctccgatgggaggggcagcgctatgttgagatt
cagaccctgccctcacgtggatccatggctgtgtatccattcactgtgggcccccgacag
tatcttctcctagggagtgatttctccttctctcgagtttacctgtgggatgacctcacc
cagcgcttccagcccttccaggagctcaacatgagagcaccccgggccttcagcttggtg
tctgtggacaacaaagacatgctgctggcagccagctttaaaggcaacaccctagcctac
cagcacctaatagtggatctcagtgccaaatag
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